View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18151_low_11 (Length: 388)
Name: NF18151_low_11
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_low_11 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 208 - 388
Target Start/End: Complemental strand, 10102163 - 10101983
Alignment:
| Q |
208 |
tattctaaggcgataagtataatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacgg |
307 |
Q |
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| T |
10102163 |
tattctaaggcgataagtataatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttaaatcacggtgaatttgtcgaaataacgg |
10102064 |
T |
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| Q |
308 |
tggaactgtgatgttgttgatgctacgaagtgtagcttttgccaaaatcacaatggctcgccgtgatttcactcgcctagt |
388 |
Q |
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| T |
10102063 |
tggaactgtgatgttgttgatgctacgaagtgtagcttttgccaaaatcacaatggctcgccgtgatttcactcgcctagt |
10101983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 157 - 376
Target Start/End: Original strand, 10213895 - 10214112
Alignment:
| Q |
157 |
gtcactataattgatggatggtgaaagtgaaactcctattctgagaagaactattctaaggcgataagtataatatttttaaaagcatgtaacttttaat |
256 |
Q |
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| T |
10213895 |
gtcactattattgatggatggtgaaagtgtaacttttattctaaacagaactcttctaaggtgaaaagca--atattttgaaaagcatgtaacttttaat |
10213992 |
T |
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| Q |
257 |
gaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctacgaagtgtagcttttgccaaaatc |
356 |
Q |
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| T |
10213993 |
gaaaaccttcatacgataacttgaaccacagtgaattcgacaaaataactgtggcaccgtgatgttgttgatgctacaaagtgtagcttttgccaaaatc |
10214092 |
T |
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| Q |
357 |
acaatggctcgccgtgattt |
376 |
Q |
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| T |
10214093 |
acaatggcttgcggtgattt |
10214112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 157 - 358
Target Start/End: Original strand, 9661591 - 9661790
Alignment:
| Q |
157 |
gtcactataattgatggatggtgaaagtgaaactcctattctgagaagaactattctaaggcgataagtataatatttttaaaagcatgtaacttttaat |
256 |
Q |
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| T |
9661591 |
gtcactataattgatggatagtgaaagtgtaactcgtattctaagcataactctcctaaggtgaaaagta--atattttaaaaagcatgcaacttttatt |
9661688 |
T |
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| Q |
257 |
gaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttgatgctacgaagtgtagcttttgccaaaatc |
356 |
Q |
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| T |
9661689 |
gaaaaccttcatacgataacttgaatcacggtgaatttgacgaaacaaaggtggcaccgtgatgttgttgattctataaagtgtggtttttgccaaaatc |
9661788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 10101630 - 10101484
Alignment:
| Q |
228 |
aatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgttga |
327 |
Q |
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|||| ||| ||||||||| ||||||||||||||| |||||||| ||||| ||||| || ||||||||| |||||||||| ||| || ||||||||||| | |
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| T |
10101630 |
aatactttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaat-acagtgaatttgacgaaataacgatggcaccgtgatgttgtt-a |
10101533 |
T |
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| Q |
328 |
tgctacgaagtgtagcttttgccaaaatcacaatggctcgccgtgattt |
376 |
Q |
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| T |
10101532 |
tgctacaaagtgtagcttttgccaagatcacaatggcttgccgtgattt |
10101484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 12110133 - 12110265
Alignment:
| Q |
226 |
ataatatttttaaaagcatgtaacttttaatgaaaaacttcatacgataacttgaatcacggtgaatttgtcgaaataacggtggaactgtgatgttgtt |
325 |
Q |
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| T |
12110133 |
ataatattttaaaaagcatgcaacttttattgaaaaccttcatacagtaacttgaatcacggtgaatttaacgaaacaaaggtggcactgtgatgttgtt |
12110232 |
T |
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| Q |
326 |
gatgctacgaagtgtagcttttgccaaaatcac |
358 |
Q |
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||| |||| ||||| || ||||| ||||||||| |
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| T |
12110233 |
gattctacaaagtgaagtttttgtcaaaatcac |
12110265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 9659849 - 9659893
Alignment:
| Q |
237 |
aaaagcatgtaacttttaatgaaaaacttcatacgataacttgaa |
281 |
Q |
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| T |
9659849 |
aaaagcatgcaacttttaatgaaaatcttcatacgataacttgaa |
9659893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 9676960 - 9677008
Alignment:
| Q |
46 |
tacccctttataagttgtggtatggttcatcttttatctattgtaacaa |
94 |
Q |
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| T |
9676960 |
tacccctttataagtggtggtatggtttaccttttatctattgtaacaa |
9677008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 14816449 - 14816398
Alignment:
| Q |
297 |
cgaaataacggtggaactgtgatgttgttgatgctacgaagtgtagcttttg |
348 |
Q |
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| T |
14816449 |
cgaaatcacggtggaaccgtgattttgttgaagctccgaagtgtagcttttg |
14816398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 10213818 - 10213852
Alignment:
| Q |
60 |
ttgtggtatggttcatcttttatctattgtaacaa |
94 |
Q |
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| T |
10213818 |
ttgtggtatggtttatcttttatctattgtaacaa |
10213852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 12110075 - 12110116
Alignment:
| Q |
157 |
gtcactataattgatggatggtgaaagtgaaactcctattct |
198 |
Q |
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| T |
12110075 |
gtcactataattgatggatagtgaaagtgtaactcttattct |
12110116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 8472590 - 8472547
Alignment:
| Q |
312 |
actgtgatgttgttgatgctacgaagtgtagcttttgccaaaat |
355 |
Q |
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| T |
8472590 |
actgtgattttgttgaagctacaaagtgtagcttttgccaaaat |
8472547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 6774724 - 6774769
Alignment:
| Q |
315 |
gtgatgttgttgatgctacgaagtgtagcttttgccaaaatcacaa |
360 |
Q |
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| T |
6774724 |
gtgattttgttgaagctccgaagtgtagcttttgctaaaatcacaa |
6774769 |
T |
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