View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18151_low_12 (Length: 315)
Name: NF18151_low_12
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 34549727 - 34550014
Alignment:
| Q |
19 |
gttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttcaagacctggagtgtataagattccttcgtaccaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549727 |
gttgtatcacttcattaacatcttcatctttgtcaaatttagtattttctacataaatctcttcaagacctggagtgtataagattccttcgtaccaaaa |
34549826 |
T |
|
| Q |
119 |
ggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctagga |
218 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549827 |
ggtcttcatctctgggcagtcattaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctagga |
34549926 |
T |
|
| Q |
219 |
agcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
306 |
Q |
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||||||||||||||||||| | || |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
34549927 |
agcttctctagtaatatttcctccaatattggaaatttaatcttagctttctgttgtgaacaattattcctaatgatctccttcatct |
34550014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 34377653 - 34377366
Alignment:
| Q |
19 |
gttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctct-tcaagacctggagtgtataagattccttcgtaccaaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | || |||||||||||| |||||||| | |||||||| |
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| T |
34377653 |
gttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaat-tctataaatacctggagtgtacaagattccattgtaccaaa |
34377555 |
T |
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| Q |
118 |
aggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctagg |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
34377554 |
aggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagctttcactgaaacatttgaggctagg |
34377455 |
T |
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| Q |
218 |
aagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
306 |
Q |
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|||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377454 |
aagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
34377366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 135158 - 134895
Alignment:
| Q |
19 |
gttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttcaagacctggagtgtataagattccttcgtaccaaaa |
118 |
Q |
| |
|
|||||||||| |||||||||||||| | || ||||||||||||||||| || | |||| || | ||||| ||| |||||||||||||||||| ||||||| |
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| T |
135158 |
gttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcataaagacgtggggtgtataagattccttcgaaccaaaa |
135059 |
T |
|
| Q |
119 |
ggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctagga |
218 |
Q |
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||||||||||||||| ||||| | |||| ||| | ||||| ||||||||||| ||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
135058 |
ggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggctagga |
134959 |
T |
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| Q |
219 |
agcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaat |
282 |
Q |
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||||||| ||| || ||| | | || ||||||||||| |||||||||||||||| ||||| |
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|
| T |
134958 |
agcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaat |
134895 |
T |
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