View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18151_low_16 (Length: 265)

Name: NF18151_low_16
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18151_low_16
NF18151_low_16
[»] chr2 (23 HSPs)
chr2 (10-246)||(14552537-14552773)
chr2 (15-246)||(15023968-15024199)
chr2 (17-246)||(14512517-14512746)
chr2 (28-246)||(14520362-14520577)
chr2 (17-245)||(14528967-14529195)
chr2 (17-245)||(14543193-14543421)
chr2 (27-246)||(15008043-15008262)
chr2 (17-246)||(14534192-14534421)
chr2 (17-246)||(14547334-14547563)
chr2 (17-246)||(14567583-14567812)
chr2 (48-246)||(15003772-15003970)
chr2 (73-246)||(14850228-14850401)
chr2 (24-246)||(15013447-15013669)
chr2 (24-246)||(31969367-31969589)
chr2 (24-246)||(15019942-15020164)
chr2 (109-246)||(14525198-14525335)
chr2 (23-246)||(14847523-14847741)
chr2 (198-246)||(14168641-14168689)
chr2 (203-246)||(14485645-14485688)
chr2 (205-246)||(14480925-14480966)
chr2 (205-242)||(14153301-14153338)
chr2 (205-246)||(14495101-14495142)
chr2 (205-246)||(14502588-14502629)
[»] chr4 (1 HSPs)
chr4 (199-246)||(49553778-49553825)
[»] chr1 (1 HSPs)
chr1 (205-246)||(24741547-24741588)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 14552537 - 14552773
Alignment:
Q  10 attattctgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcat 109  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14552537 attaatctgatgtctgattttggcgtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcat 14552636  T
Q  110 tggaggaagttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaa 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14552637 tggaggaagttaaaggtttagggtttcatcccccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaa 14552736  T
Q  210 agttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  14552737 agttgatgtctttaagaaatggggttggtctgatgaa 14552773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 15023968 - 15024199
Alignment:
Q  15 tctgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggag 114  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||    
T  15023968 tctgatttctgattttggagtttctgattctgtcattgctagattgcttcaaaataagccatctatatttggttcaaaggatttgattaagtcattggag 15024067  T
Q  115 gaagttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttg 214  Q
    ||||||||  ||||||||||| ||||| |||   || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15024068 gaagttaagagtttagggtttgatccttcaacagcttcttttggggttgctttggtagccaagaaaggtatgagtaaaaaactttgggatgagaaagttg 15024167  T
Q  215 atgtctttaagaaatggggttggtctgatgaa 246  Q
    |   ||||||||||||||||||||||||||||    
T  15024168 acacctttaagaaatggggttggtctgatgaa 15024199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 14512517 - 14512746
Alignment:
Q  17 tgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggagga 116  Q
    ||||||||||||||||||| ||| ||  ||| |||| ||| ||||||||    |  || ||||||||| ||||||||||||||||||||||||| |||||    
T  14512517 tgatgtctgattttggagtttctgataatgttattggtagtttgcttcagtcaaggccgtctatatttggttcaaaggatttgattaagtcattagagga 14512616  T
Q  117 agttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgat 216  Q
    |||||| | |||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  14512617 agttaaggatttagggtttcatccttcattgactacttttagggctgctttgatagccaagaaaggtatgactaaaaaactttgggataagaaagttgat 14512716  T
Q  217 gtctttaagaaatggggttggtctgatgaa 246  Q
    |||||||||||| |||||||||||| ||||    
T  14512717 gtctttaagaaacggggttggtctggtgaa 14512746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 14520362 - 14520577
Alignment:
Q  28 tttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaaggtt 127  Q
    |||||||| ||| |||||  ||||||||||||||||||||  |   ||||||||||| ||||||  ||||||||||||||||| |||||||||||  |||    
T  14520362 tttggagtttctgattctaacattgctagattgcttcaaacaaggtcatctatatttggttcaactgatttgattaagtcattagaggaagttaagtgtt 14520461  T
Q  128 tagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtctttaagaa 227  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  14520462 tagggtttcatccttcaaagactacttttggggctgctttgatagccaagaaatgt---agtaaaaaactttgggatgagaaagttgatgtctttaagaa 14520558  T
Q  228 atggggttggtctgatgaa 246  Q
    |||||| ||||||||||||    
T  14520559 atggggctggtctgatgaa 14520577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 14528967 - 14529195
Alignment:
Q  17 tgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggagga 116  Q
    ||||||||||||||||||| ||| ||  ||| |||| ||| ||||||||    |  || ||||||||| |||||||||||||||||||||||||||||||    
T  14528967 tgatgtctgattttggagtttctgataatgttattggtagtttgcttcagtcaaggccgtctatatttggttcaaaggatttgattaagtcattggagga 14529066  T
Q  117 agttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgat 216  Q
    |||||| | |||||||||||||||| |||| |||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  14529067 agttaaggatttagggtttcatccttcaatgactaattttgggactgctttgatggccaagaaatgtatgagtaaaaaactttgggatgagaaaattgat 14529166  T
Q  217 gtctttaagaaatggggttggtctgatga 245  Q
      |||||||||||||||||||||||||||    
T  14529167 acctttaagaaatggggttggtctgatga 14529195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 14543193 - 14543421
Alignment:
Q  17 tgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggagga 116  Q
    ||||||||||||||||||| ||| ||  ||| |||| ||| ||||||||    |  || ||||||||| |||||||||||||||||||||||||||||||    
T  14543193 tgatgtctgattttggagtttctgataatgttattggtagtttgcttcagtcaaggccgtctatatttggttcaaaggatttgattaagtcattggagga 14543292  T
Q  117 agttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgat 216  Q
    |||||| | |||||||||||||||| |||| |||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  14543293 agttaaggatttagggtttcatccttcaatgactaattttgggactgctttgatggccaagaaatgtatgagtaaaaaactttgggatgagaaaattgat 14543392  T
Q  217 gtctttaagaaatggggttggtctgatga 245  Q
      |||||||||||||||||||||||||||    
T  14543393 acctttaagaaatggggttggtctgatga 14543421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 15008043 - 15008262
Alignment:
Q  27 ttttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaaggt 126  Q
    ||||||||| ||| |||||  |||||||| ||||||||| |  |  |||||||||||| ||||||  ||||||||||||||||| |||||||||||  ||    
T  15008043 ttttggagtttctgattctaccattgctaaattgcttcagaaaaggccatctatatttggttcaactgatttgattaagtcattagaggaagttaagcgt 15008142  T
Q  127 ttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtctttaaga 226  Q
    ||||||||||||||| |||  |||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  15008143 ttagggtttcatccttcaacaactacttttgggactgctttgacagccaagaaaggtttaagtaaaaaactttgggatgagaaagttgatgcctttaaga 15008242  T
Q  227 aatggggttggtctgatgaa 246  Q
    ||||||||||||||||||||    
T  15008243 aatggggttggtctgatgaa 15008262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 14534192 - 14534421
Alignment:
Q  17 tgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggagga 116  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||| ||| |  || ||||| | || |||||||||||||||||||||| |||||||||||    
T  14534192 tgatgactgattttggaattcctcattctgtcattgctagattgattcgatctagaccatttttaatttgttcaaaggatttgattaattcattggagga 14534291  T
Q  117 agttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgat 216  Q
    | |||| |||||||||||| ||||| |||  ||||||||||||  ||||||| ||||||| ||  ||| |||||||||||||||||||||||||||||||    
T  14534292 aattaagggtttagggtttgatccttcaacgactacttttgggtatgctttgttagccaataactgtacgagtaaaaaactttgggatgagaaagttgat 14534391  T
Q  217 gtctttaagaaatggggttggtctgatgaa 246  Q
    ||||| ||||||||||||||||||||||||    
T  14534392 gtcttgaagaaatggggttggtctgatgaa 14534421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 14547334 - 14547563
Alignment:
Q  17 tgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggagga 116  Q
    ||||| ||||||||||||| ||| |||||||||||||||| ||||||||||  |  |||||||||||| |||| |  |||||||||||||||||||||||    
T  14547334 tgatgactgattttggagtttctgattctgtcattgctagcttgcttcaaaaaaggccatctatatttggttcgactgatttgattaagtcattggagga 14547433  T
Q  117 agttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgat 216  Q
    ||||||  ||||||||||| ||||| |||   |||||||||||||||||||| | ||||||||| |||||||||||| ||  |||||||||||||| |      
T  14547434 agttaagtgtttagggtttgatccttcaacggctacttttggggctgctttgttcgccaagaaatgtatgagtaaaacacgatgggatgagaaagtcgcc 14547533  T
Q  217 gtctttaagaaatggggttggtctgatgaa 246  Q
    ||||||||||||||||||||||||||||||    
T  14547534 gtctttaagaaatggggttggtctgatgaa 14547563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 14567583 - 14567812
Alignment:
Q  17 tgatgtctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggagga 116  Q
    ||||||||||||||||||| ||| ||  |||||||||||| ||||||||    |  ||||||||| || |||||||||| ||||||||||||||||||||    
T  14567583 tgatgtctgattttggagtttctgataatgtcattgctagtttgcttcagtcaaggccatctatagttggttcaaaggaattgattaagtcattggagga 14567682  T
Q  117 agttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgat 216  Q
    ||||||  ||||||||||| ||||| |||   || ||||||||| |||||||  |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  14567683 agttaagagtttagggtttgatccttcaacagcttcttttggggttgctttggcagccaagaaatgtatgagaaaaaaacgttgggatgagaaagttgat 14567782  T
Q  217 gtctttaagaaatggggttggtctgatgaa 246  Q
    | ||||||||||||||||||||||||||||    
T  14567783 gcctttaagaaatggggttggtctgatgaa 14567812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 15003970 - 15003772
Alignment:
Q  48 cattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaaggtttagggtttcatcctccaatc 147  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||||||||||| ||||||||||||||||||  ||||||||||| |  || |||      
T  15003970 cattgctagattgcttcaaaaaaggccatctatatttggttcaaaggatttgattatgtcattggaggaagttaagtgtttagggtttgacgcttcaacg 15003871  T
Q  148 actacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    || ||||||||| ||||||||||  ||||| || |||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  15003870 accacttttgggactgctttgatgaccaagcaatgtatgagtaaaatactttgggataagaaagttgacgtctttaagaaatggggttggtctgatgaa 15003772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 14850401 - 14850228
Alignment:
Q  73 ccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatag 172  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||  | || ||||||   ||||||   ||    
T  14850401 ccatctgtatttggttcaaaggatttgattaagtcattggaggaagttaagtgtttagggtttgatccttcaaagaatagttttggaattgctttagcag 14850302  T
Q  173 ccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    | ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14850301 caaagaaaggtttgagtaaaaaactttgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaa 14850228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 15013447 - 15013669
Alignment:
Q  24 tgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaa 123  Q
    |||||||||||| | | |||||| ||||||||||||||||| || ||    |||||||| ||||||||| ||||||||||||||||||||||| |||||     
T  15013447 tgattttggagtttgtgattctgccattgctagattgcttcgaactaggaaatctatatattgttcaaatgatttgattaagtcattggaggacgttaag 15013546  T
Q  124 ggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtcttta 223  Q
    |||||||||||| | ||| |||   |  |||||||| |||||||| |  ||||| |  |||||||||| | |||||||||| |||||||||| |||||||    
T  15013547 ggtttagggtttgacccttcaacggccgcttttgggactgctttggtgaccaagcattgtatgagtaacatactttgggataagaaagttgacgtcttta 15013646  T
Q  224 agaaatggggttggtctgatgaa 246  Q
    |||||||||||||||||||||||    
T  15013647 agaaatggggttggtctgatgaa 15013669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 31969367 - 31969589
Alignment:
Q  24 tgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaa 123  Q
    |||||||||||| | | |||||| ||||||||||||||||| || ||    |||||||| ||||||||| ||||||||||||||||||||||| |||||     
T  31969367 tgattttggagtttatgattctgccattgctagattgcttcgaactaggaaatctatatcttgttcaaatgatttgattaagtcattggaggacgttaag 31969466  T
Q  124 ggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtcttta 223  Q
    |||||||||||| | ||| |||  |   | |||||| |||||||| |  ||||| || |||||||||| | |||||||||| |||||||||| |||||||    
T  31969467 ggtttagggtttgacccttcaacgatcgcatttgggactgctttggtgaccaagcaatgtatgagtaacatactttgggataagaaagttgacgtcttta 31969566  T
Q  224 agaaatggggttggtctgatgaa 246  Q
    |||||||||||||||||||||||    
T  31969567 agaaatggggttggtctgatgaa 31969589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 15019942 - 15020164
Alignment:
Q  24 tgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaaa 123  Q
    |||||||||| | ||| |||||  ||||||||||||||||| ||  |  |||||||||||| ||||||| ||| ||||||||| |||||||||| ||||     
T  15019942 tgattttggattttctgattctaccattgctagattgcttcgaacaaggccatctatatttggttcaaatgatatgattaagttattggaggaaattaag 15020041  T
Q  124 ggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtcttta 223  Q
    |||||||||||| | ||| |||  ||  |||||||| ||||||||||  ||||| ||    || |||| | |||||||||| |||||||||| |||||||    
T  15020042 ggtttagggtttaaaccttcaacgaccgcttttgggactgctttgatgaccaagcaattgttgggtaacatactttgggataagaaagttgacgtcttta 15020141  T
Q  224 agaaatggggttggtctgatgaa 246  Q
    |||||||||||||||||||||||    
T  15020142 agaaatggggttggtctgatgaa 15020164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 14525198 - 14525335
Alignment:
Q  109 ttggaggaagttaaaggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgaga 208  Q
    |||||||||||||| |||||||||||||| | | |||   | ||||||||||| |||||| | || |||||| |||||||||||| ||||||||||||||    
T  14525198 ttggaggaagttaagggtttagggtttcacctttcaacttcaacttttggggcagctttggttgcaaagaaatgtatgagtaaaacactttgggatgaga 14525297  T
Q  209 aagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  14525298 aagttgatgtttttaagaaatggggttggactgatgaa 14525335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 14847741 - 14847523
Alignment:
Q  23 ctgattttggagtgtctcattctgtcattgctagattgcttcaaattaaaccatctatattttgttcaaaggatttgattaagtcattggaggaagttaa 122  Q
    ||||||||||||| |   |||||  ||||| ||||||||||||||  |   ||||||||||| ||  ||  | ||||||||||||||    ||| |||||    
T  14847741 ctgattttggagtttgcgattctaccattgatagattgcttcaaaaaaggtcatctatatttggtcaaactggtttgattaagtcat----ggaggttaa 14847646  T
Q  123 aggtttagggtttcatcctccaatcactacttttggggctgctttgatagccaagaaaggtatgagtaaaaaactttgggatgagaaagttgatgtcttt 222  Q
     |||||||| ||| ||||| |||| |||||||| |||||| | ||||||||||||||| ||| |||||||| || |||||||||| ||||||||||||||    
T  14847645 cggtttaggttttgatccttcaatgactactttcggggcttccttgatagccaagaaatgtaggagtaaaacacgttgggatgag-aagttgatgtcttt 14847547  T
Q  223 aagaaatggggttggtctgatgaa 246  Q
     ||||| |||||||||||||||||    
T  14847546 gagaaacggggttggtctgatgaa 14847523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 14168689 - 14168641
Alignment:
Q  198 ttgggatgagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14168689 ttgggatgcgaaagttgttgtctttaagaaatggggttggtctgatgaa 14168641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 14485645 - 14485688
Alignment:
Q  203 atgagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  14485645 atgaaaaagttgatgtctttaagaaatggggatggtctgatgaa 14485688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 14480966 - 14480925
Alignment:
Q  205 gagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  14480966 gagaaagttgatgcctttaagaagtggggttggtctgatgaa 14480925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 14153301 - 14153338
Alignment:
Q  205 gagaaagttgatgtctttaagaaatggggttggtctga 242  Q
    |||||||||||||  |||||||||||||||||||||||    
T  14153301 gagaaagttgatgcttttaagaaatggggttggtctga 14153338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 14495101 - 14495142
Alignment:
Q  205 gagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||    
T  14495101 gagaaagttgatgccttgaagaaatggggttggtcggatgaa 14495142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 14502588 - 14502629
Alignment:
Q  205 gagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||    
T  14502588 gagaaagttgatgcctttaagaagtggggttggtcggatgaa 14502629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 49553778 - 49553825
Alignment:
Q  199 tgggatgagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    |||| ||||||||||||  | |||||||||||||||||||||||||||    
T  49553778 tgggctgagaaagttgaaatttttaagaaatggggttggtctgatgaa 49553825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 24741547 - 24741588
Alignment:
Q  205 gagaaagttgatgtctttaagaaatggggttggtctgatgaa 246  Q
    |||| |||||||| |||||||||||||||||||| |||||||    
T  24741547 gagacagttgatgcctttaagaaatggggttggtttgatgaa 24741588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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