View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18151_low_18 (Length: 250)

Name: NF18151_low_18
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18151_low_18
NF18151_low_18
[»] chr7 (5 HSPs)
chr7 (57-240)||(47287613-47287797)
chr7 (1-47)||(29238992-29239038)
chr7 (1-47)||(30806192-30806238)
chr7 (1-47)||(8174193-8174239)
chr7 (1-47)||(32676889-32676935)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-47)||(1339-1385)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-47)||(1394-1440)
[»] chr8 (1 HSPs)
chr8 (1-47)||(7763886-7763932)
[»] chr6 (4 HSPs)
chr6 (1-47)||(9246329-9246375)
chr6 (1-34)||(24758816-24758849)
chr6 (1-46)||(30705037-30705082)
chr6 (1-46)||(32049913-32049958)
[»] chr5 (2 HSPs)
chr5 (1-47)||(4417632-4417678)
chr5 (1-47)||(36888342-36888388)
[»] chr4 (3 HSPs)
chr4 (1-47)||(43271664-43271710)
chr4 (1-47)||(55251298-55251344)
chr4 (1-33)||(46105612-46105644)
[»] chr3 (2 HSPs)
chr3 (1-47)||(33225295-33225341)
chr3 (1-46)||(47098809-47098854)
[»] chr2 (1 HSPs)
chr2 (1-47)||(2643774-2643820)
[»] chr1 (2 HSPs)
chr1 (1-47)||(16343105-16343151)
chr1 (1-47)||(40211472-40211518)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 57 - 240
Target Start/End: Complemental strand, 47287797 - 47287613
Alignment:
Q  57 gatagagaaaagaacc-gtcttacatgtactcttgatgtagcctaactaagttttttaaattaatttcaaattgatatgagtttacgaaaagttgtttgg 155  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47287797 gatagagaaaagaacccgtcttacatgtactcttgatgtagcctaactaagttttttaaattaatttcaaattgatatgagtttacgaaaagttgtttgg 47287698  T
Q  156 ccnnnnnnnttcttgtcaaagcttaagttctatgtgagatcaacttatctcttgttggaacatgtgtttattataggctcctttg 240  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47287697 ccaaaaaaattcttgtcaaagcttaagttctatgtgagatcaacttatctcttgttggaacctgtgtttattataggctcctttg 47287613  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29238992 - 29239038
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  29238992 ttctccacaattaaattgtgtgagatctagccaccaagctacttgac 29239038  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30806192 - 30806238
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||    
T  30806192 ttctccacaattaaattgtgtgagttctagccaccaagctacttgac 30806238  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8174193 - 8174239
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| | ||||||||||    
T  8174193 ttctccacaattaaattgtgtgagctctagccactaggcttcttgac 8174239  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32676935 - 32676889
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  32676935 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 32676889  T

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Target: scaffold0394 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1339 - 1385
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  1339 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 1385  T

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Target: scaffold0254 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1394 - 1440
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  1394 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 1440  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7763932 - 7763886
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  7763932 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 7763886  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9246375 - 9246329
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||||| ||||||| | ||| ||||||    
T  9246375 ttctccacaattaaattgtgtgagatctagccactaggctacttgac 9246329  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24758816 - 24758849
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24758816 ttctccacaattaaattgtgtgagctatagccac 24758849  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30705037 - 30705082
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttga 46  Q
    |||||||||||||||||||||||| | ||||||||| ||| |||||    
T  30705037 ttctccacaattaaattgtgtgagctctagccaccaggctacttga 30705082  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32049958 - 32049913
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttga 46  Q
    |||||||||||||||||||||||| | ||||||||| ||| |||||    
T  32049958 ttctccacaattaaattgtgtgagctctagccaccaggctacttga 32049913  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4417678 - 4417632
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||||| ||| ||||||    
T  4417678 ttctccacaattaaattgtgtgagctctagccaccaggctacttgac 4417632  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36888388 - 36888342
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  36888388 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 36888342  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43271710 - 43271664
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||||||    
T  43271710 ttctccacaattaaattgtgtgagctatagccactaggctacttgac 43271664  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 55251344 - 55251298
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||||| ||| ||||||    
T  55251344 ttctccacaattaaattgtgtgagctctagccaccaggctacttgac 55251298  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46105612 - 46105644
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagcca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  46105612 ttctccacaattaaattgtgtgagctatagcca 46105644  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33225341 - 33225295
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  33225341 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 33225295  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47098809 - 47098854
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttga 46  Q
    |||||||||||||||||||||||| | ||||||| ||||| |||||    
T  47098809 ttctccacaattaaattgtgtgagctctagccactaagctacttga 47098854  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2643774 - 2643820
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  2643774 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 2643820  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16343105 - 16343151
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  16343105 ttctccacaattaaattgtgtgagctctagccactaagctacttgac 16343151  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40211518 - 40211472
Alignment:
Q  1 ttctccacaattaaattgtgtgagatatagccaccaagcttcttgac 47  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||||||    
T  40211518 ttctccacaattaaattgtgtgagctatagccactaggctacttgac 40211472  T

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