View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18151_low_2 (Length: 596)
Name: NF18151_low_2
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 5726376 - 5726700
Alignment:
| Q |
10 |
aacctgtgcatatgaaaaatatatacccgaatatgtcaatatcataaaatgatatcaattaactcaaaaggaatctctacgag--------------aca |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
5726376 |
aacctgtgcatatgaaaaatatatacccgaatatgtcaatatcataaaatgatatcaattaactcaaaaggaatctctgcaattgctcgtagatgttaca |
5726475 |
T |
|
| Q |
96 |
ttatttgtttgctaaggaaaaactaagaagttaagggtgcaaaaattaactctaaattttatgcttcattatgtcggcatatgttaatatcttaattaaa |
195 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5726476 |
ttatttgtt-gctaaggaaaaactaagaagttaaggttgcaaaaattaactctaaattttatgcttcattatgtcggcatatgttaatatcttaattaaa |
5726574 |
T |
|
| Q |
196 |
ttaaagaaatgctttttccagtctactattttctcgcacgtcctttgatcttatcattta-tccattaagattatataatccgaaaatattatagggtat |
294 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
5726575 |
ttaaagaaatgcttttttcagtctactattttctcgcacctcctttgatctaatcatttaccccgttaagattatataatccgaaagtattatggggtat |
5726674 |
T |
|
| Q |
295 |
ttgagattatataacccaaacgcgtt |
320 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
5726675 |
ttgagattatataacccgaacgcgtt |
5726700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 442 - 596
Target Start/End: Original strand, 5726825 - 5726979
Alignment:
| Q |
442 |
gatcatatataagaaaaactaaattctttattagatttatctatgcaagcctcgatttattcataggtattcgatgaggtgatcattaatttggtcaaga |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5726825 |
gatcatatataagaaaaactaaattctttaccagatttatctatgcaagcctcgatttattcataggtattcgatgaggtgaccattaatttggtcaaga |
5726924 |
T |
|
| Q |
542 |
tgatcccttaagtcaaacagtgtaacatcaacatgaaccctaaatagattggact |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5726925 |
tgatcccttaagtcaaacagtgtaacatcaacatgaaccctaaatagattggact |
5726979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University