View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18151_low_20 (Length: 236)
Name: NF18151_low_20
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45289405 - 45289626
Alignment:
| Q |
1 |
atatgggctctgttttatatgacctcataattgttatccgatgaagataaagaccctggagattcatatgaaggaacatgcctcctcctaggagatcctt |
100 |
Q |
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| T |
45289405 |
atatgggctctgttttttatgacctcataattgttatccgatgaagataaagaccttggagattcatatgaaggaacatgcctcctcctaggagatcctt |
45289504 |
T |
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| Q |
101 |
tcgaactatttcctccaataagaatcattcacaataaagaaaattaaacacaaaactgaaaccaaagttgtccaagtttgtatctgcaatttaaaaacaa |
200 |
Q |
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| T |
45289505 |
tcgaactatttcctccaacaaaaatcattcacaataaagaaaattaaacacaaaactgaaaccaaagttgtccaagtttgtatctgcaatttaaaaacaa |
45289604 |
T |
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| Q |
201 |
atacatgaagtaaggtttatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45289605 |
atacatgaagtaaggtttatat |
45289626 |
T |
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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 39204468 - 39204638
Alignment:
| Q |
41 |
atgaagataaagaccctggagattcatatgaaggaacatgcctcctcctaggagatcctttcgaactatttcctccaataagaa--tcattcacaataaa |
138 |
Q |
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| T |
39204468 |
atgaagatgaagaacctgaagcctcatatgaaggaacatgccttctcctaggagacccttttgaactattccctcccataacaatctccttcagaataaa |
39204567 |
T |
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| Q |
139 |
gaaaattaaacacaaaactgaaaccaaagttgtccaagtttgtatctgcaatttaaaaacaaatacatgaa |
209 |
Q |
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| T |
39204568 |
ataaagtaaacacaaaattgctaccaaagctgtccaagtttctagctgcaattccataacaaagacatgaa |
39204638 |
T |
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