View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18151_low_3 (Length: 553)
Name: NF18151_low_3
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 20 - 546
Target Start/End: Complemental strand, 48669298 - 48668772
Alignment:
| Q |
20 |
gggtcatcctcgtttccattcttgttcgcaaattcatctctttctttgctattcctatctactggactggcttctttcttgattttttcctcaatcttct |
119 |
Q |
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| T |
48669298 |
gggtcatcctcgtttccattcttgttcgcaaattcatctctttctttgctattcctatctactggactggcttctttcttgattttttcctcaatcttct |
48669199 |
T |
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| Q |
120 |
ttccctgaacggtgcttccttctttgctcttctcaacaacttcatacatggaagagtggtcatacctgacaggggttctcaatcttttataagtacaatt |
219 |
Q |
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| T |
48669198 |
ttcccttaacggtgcttccttctttgctcttctcaacaacttcatacatggaagagtggtcatacccgacaggggttctcaatcttttgtaagtacaatt |
48669099 |
T |
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| Q |
220 |
ggtcacttagacgccaggcttgatcttcaaaccacaaatggaaatggagccttccaaccacacatgggaaaccgtgctttaatggatctctgcattatgt |
319 |
Q |
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| T |
48669098 |
ggtcacttagacgccaggcttgatcttcaaaccacaaatggaaatggagccttccaaccacacatgggaaaccgtgctttaatggatctctgcattatgt |
48668999 |
T |
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| Q |
320 |
cttccaagatagcatatgagaaccctaaactcatcaaaaatgtcgtcaaccaccattggaacatgcactttgtagatttctatcattgttggaatggtat |
419 |
Q |
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| T |
48668998 |
cttccaagatagcatatgagaaccctaaactcatcaaaaatgtcgtcaaccaccattggaacatgcactttgtagatttctatcattgttggaatggtat |
48668899 |
T |
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| Q |
420 |
gttgcattatctacaatcataattaatgatttcattcaattcaacttttctcacttcctaatccttccttcatcaatcaattcttagatttcgagaaaca |
519 |
Q |
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| T |
48668898 |
gttgcattatctacaatcataattaattatttcattcaattcaacttttctcacttcctattccttccttcatcaatcaattcttagatttcgagaaaca |
48668799 |
T |
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| Q |
520 |
gatgtccactcaagtcttcatcctatg |
546 |
Q |
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| T |
48668798 |
gatgtccactcaagtcttcatcctatg |
48668772 |
T |
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