View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18151_low_5 (Length: 507)
Name: NF18151_low_5
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 148 - 492
Target Start/End: Complemental strand, 3428386 - 3428042
Alignment:
| Q |
148 |
ttgacattagctcgttcatgtttgtgcattaaattctcaaagaattgttgttataaatcaacttttattcttttattttgtgatccccactcttgacaat |
247 |
Q |
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| T |
3428386 |
ttgacattagctcgttcatgtttgtgcattaaattctcaaagaattattgttataaatcaacttttattcttttattttgtgatccccactcttgacaat |
3428287 |
T |
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| Q |
248 |
tcaattgtctcatgacatcatcttgtctccttgagatggagagagacatttcaaacgtttgcactcttcttctctcataacccatttgtgcaacttaacg |
347 |
Q |
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| T |
3428286 |
tcaattgtctcatgacatcatcttgtctccttgagatggagagagacatttcaaacgtttgcactcttcttctctcataacccatttgtgcaacttaacg |
3428187 |
T |
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| Q |
348 |
ataattaacatcaattcaaaattgattcttacacactacaggcacatttacactacacatgagattcttaaattatatatgagaaaatgatagaatattt |
447 |
Q |
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| T |
3428186 |
ataattaacatcaattcaaaattgattcttacacactacgggcacatttacactacacatgagattcttaaattatatatgagaaaatgatagaatattt |
3428087 |
T |
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| Q |
448 |
ccagcttataaatttgtaccactaaagcttgagtaataagaaaat |
492 |
Q |
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| T |
3428086 |
ccagcttataaatttgtaccactaaaacttgagtaataagaaaat |
3428042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 3428581 - 3428449
Alignment:
| Q |
19 |
aggtctgaatatgagattctccacttctcaagatttcacgtgtttgattttaactattagactgtttgacaaaattgataattaatttataggcaaaatt |
118 |
Q |
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| T |
3428581 |
aggtctgaatatgagattctccgcttctcaagattttacgtgtttgattttaactactagattgttagacaaaattgataattaatttataggcaaaatt |
3428482 |
T |
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| Q |
119 |
agataaagaatgacaatttataaactaaattga |
151 |
Q |
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| T |
3428481 |
agataaaaaatgacaatttataaactaaattga |
3428449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 147 - 282
Target Start/End: Complemental strand, 3431170 - 3431035
Alignment:
| Q |
147 |
attgacattagctcgttcatgtttgtgcattaaattctcaaagaattgttgttataaatcaacttttattcttttattttgtgatccccactcttgacaa |
246 |
Q |
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|||||||||| ||| |||||| | |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3431170 |
attgacattacctcattcatgctagtgcattatattctcaaagaattattattataaatcaacttttattcttttattttgtgatccccactcttgacaa |
3431071 |
T |
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| Q |
247 |
ttcaattgtctcatgacatcatcttgtctccttgag |
282 |
Q |
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| T |
3431070 |
tgcgattgtctcattacatcatcttgtctcgttgag |
3431035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 3430959 - 3430863
Alignment:
| Q |
390 |
cacatttacactac--acatgagattcttaaattatatatgagaaaatgatagaatatttccagcttataaatttgtaccactaaagcttgagtaat |
484 |
Q |
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| T |
3430959 |
cacatttacactactgacatgagattcttaaattatatatgaagaaacaatagaatatttccaactcatgaattcttaccactaaaacttgagtaat |
3430863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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