View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18152_high_2 (Length: 477)

Name: NF18152_high_2
Description: NF18152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18152_high_2
NF18152_high_2
[»] chr6 (4 HSPs)
chr6 (10-190)||(13123336-13123513)
chr6 (281-390)||(13115497-13115604)
chr6 (207-251)||(13123295-13123339)
chr6 (196-252)||(20891677-20891733)
[»] scaffold0338 (1 HSPs)
scaffold0338 (199-252)||(18667-18720)
[»] scaffold0035 (1 HSPs)
scaffold0035 (193-245)||(71415-71468)
[»] chr8 (1 HSPs)
chr8 (199-252)||(15061947-15062000)
[»] chr4 (1 HSPs)
chr4 (9-53)||(24474409-24474453)
[»] scaffold0171 (1 HSPs)
scaffold0171 (152-190)||(2732-2770)
[»] chr2 (1 HSPs)
chr2 (193-253)||(16592321-16592382)
[»] chr3 (1 HSPs)
chr3 (96-190)||(2278284-2278379)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 13123513 - 13123336
Alignment:
Q  10 catcatcatattctcaaattatgcataagttggttttcataaaacttgcagcagaataatcatcatacataattaggtctgatcacatacataataatag 109  Q
    ||||||||||||||||||  |||||||| ||||||||||| | ||||||||| ||| |||||||||||||||||||||||   |||||||||||||||||    
T  13123513 catcatcatattctcaaaacatgcataaattggttttcattatacttgcagcggaaaaatcatcatacataattaggtct---cacatacataataatag 13123417  T
Q  110 tctcagcagataaatccataaacaaataaatgacataaaacaaaagttccgacactcccaaatcagagcctaactagactc 190  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  13123416 tctcagcagataaatccataaacaaataaacgacataaaacaaaagtcccgacactcccatatcagagcctaactagactc 13123336  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 13115604 - 13115497
Alignment:
Q  281 catccacatttgagatagaatatgtggctttgcaatatatccttccatgcctataaattggttgaactacttgatggctcctaaggacatgattgaatta 380  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  13115604 catccacatttgagaaa--atatgtggctttgcaatatatccttccatgcctataaattggttgaactacttgatggctcccaaggacaagattgaatta 13115507  T
Q  381 ttcgtatcta 390  Q
    ||||||||||    
T  13115506 ttcgtatcta 13115497  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 13123339 - 13123295
Alignment:
Q  207 actccaagttaatcctcaagccctcacaagcaataagaaatcaat 251  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13123339 actccaagttaatcctcaagcactcacaagcaataagaaatcaat 13123295  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 20891677 - 20891733
Alignment:
Q  196 gataagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 252  Q
    ||||||||||| ||||||| || ||||| ||  ||||||||||||||||||||||||    
T  20891677 gataagaggtagctccaagctagtcctcgagtactcacaagcaataagaaatcaatc 20891733  T

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Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 18720 - 18667
Alignment:
Q  199 aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 252  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||| ||||||    
T  18720 aagaggtaactccaagctaatcctcaagcactcacaagaaataagaactcaatc 18667  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 71468 - 71415
Alignment:
Q  193 aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaa 245  Q
    ||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||    
T  71468 aaagataaggaggtagctccaagctaatcctcaagcactcacaagcaataagaa 71415  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 15061947 - 15062000
Alignment:
Q  199 aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 252  Q
    |||||||| ||||||| |||||||||||| ||||||||||||| ||| ||||||    
T  15061947 aagaggtagctccaagctaatcctcaagcactcacaagcaataggaactcaatc 15062000  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 24474453 - 24474409
Alignment:
Q  9 acatcatcatattctcaaattatgcataagttggttttcataaaa 53  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||    
T  24474453 acatcttcattttctcaaattatgcataaattggttttcataaaa 24474409  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 2732 - 2770
Alignment:
Q  152 aaagttccgacactcccaaatcagagcctaactagactc 190  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  2732 aaagtcccgacactcctaaatcagagcctaactagactc 2770  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 16592382 - 16592321
Alignment:
Q  193 aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatcc 253  Q
    ||||||||| ||||| |||||| |||| |||||||| ||||| ||||||||||| |||||||    
T  16592382 aaagataaggaggtagctccaaattaaccctcaagcactcactagcaataagaactcaatcc 16592321  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 2278284 - 2278379
Alignment:
Q  96 atacataataatagtctcagcagataaatccataaacaaataaatgacataaaacaaa---agttccgacactcccaaatcagagcctaactagactc 190  Q
    ||||||| | ||||||||||||  ||||||||| | || ||||| |||| |||| |||   ||| | |||||||| ||||||||||||||||||||||    
T  2278284 atacatagtcatagtctcagca--taaatccatcatcagataaaagacacaaaagaaacaaagtcctgacactcctaaatcagagcctaactagactc 2278379  T

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