View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18152_low_1 (Length: 608)
Name: NF18152_low_1
Description: NF18152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18152_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 70 - 593
Target Start/End: Complemental strand, 4904132 - 4903609
Alignment:
| Q |
70 |
tcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgttaagccagagaaacacgactacagaacaacca |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4904132 |
tcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgttaaaccagagaaacacgactacagaacaacca |
4904033 |
T |
|
| Q |
170 |
gaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
4904032 |
gaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaa |
4903933 |
T |
|
| Q |
270 |
ttcaacctacccaaaaaccacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcg |
369 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903932 |
ttcaacctacccaaaaaccatctccaagacaacaccttaacagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcg |
4903833 |
T |
|
| Q |
370 |
ctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaa |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4903832 |
ctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaa |
4903733 |
T |
|
| Q |
470 |
cagattaggaggaattaaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatct |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
4903732 |
cagattaggaggaattaaaaaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaatatgtgttgaatct |
4903633 |
T |
|
| Q |
570 |
tcaatcgaattattgcaccaaaca |
593 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4903632 |
tcaatcgaattattgcaccaaaca |
4903609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 517
Target Start/End: Complemental strand, 1557320 - 1557161
Alignment:
| Q |
358 |
tgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattc |
457 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | ||||||||||| | || ||||| | || | ||||||||| | || | ||| |||||||||| |
|
|
| T |
1557320 |
tgtcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatctttttattgacaacagctccaatccaacattc |
1557221 |
T |
|
| Q |
458 |
ccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagctt |
517 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
1557220 |
ccacataataaacagatttggggggattaaaaaattaaagtccagccagtccataagctt |
1557161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 1557474 - 1557359
Alignment:
| Q |
204 |
cagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaaca |
303 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||||||||||||| || ||||||||||| || | |||| ||||||||| |||||||||| ||||| | |
|
|
| T |
1557474 |
cagcctcaacgcaacagacaattcttcggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaata |
1557375 |
T |
|
| Q |
304 |
ccttaacagattccaa |
319 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
1557374 |
ccttaattgattccaa |
1557359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 12123866 - 12123902
Alignment:
| Q |
343 |
cattgttgaaaattctgtcattcctcgctttccaaat |
379 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
12123866 |
cattattgaaaattctgtcattcctagctttccaaat |
12123902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 87 - 593
Target Start/End: Original strand, 22153441 - 22153948
Alignment:
| Q |
87 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
185 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
|
|
| T |
22153441 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22153540 |
T |
|
| Q |
186 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa |
285 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22153541 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa |
22153640 |
T |
|
| Q |
286 |
accacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactcca |
385 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22153641 |
atcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactcca |
22153740 |
T |
|
| Q |
386 |
aattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaatt |
485 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
22153741 |
aattgcggcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggatt |
22153840 |
T |
|
| Q |
486 |
aaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgc |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||| |
|
|
| T |
22153841 |
aaaaaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgc |
22153940 |
T |
|
| Q |
586 |
accaaaca |
593 |
Q |
| |
|
|||||||| |
|
|
| T |
22153941 |
accaaaca |
22153948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 87 - 593
Target Start/End: Original strand, 22209356 - 22209863
Alignment:
| Q |
87 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
185 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
|
|
| T |
22209356 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22209455 |
T |
|
| Q |
186 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaa |
285 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22209456 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaa |
22209555 |
T |
|
| Q |
286 |
accacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactcca |
385 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22209556 |
atcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactcca |
22209655 |
T |
|
| Q |
386 |
aattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaatt |
485 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
22209656 |
aattgcggcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggatt |
22209755 |
T |
|
| Q |
486 |
aaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgc |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||| |
|
|
| T |
22209756 |
aaaaaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgc |
22209855 |
T |
|
| Q |
586 |
accaaaca |
593 |
Q |
| |
|
|||||||| |
|
|
| T |
22209856 |
accaaaca |
22209863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 41450828 - 41450779
Alignment:
| Q |
443 |
accattccaacattcccacataataaacagattaggaggaattaaaaaat |
492 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
41450828 |
accattccaacattgccaaagaataaacaaatttggaggaattaaaaaat |
41450779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 209 - 511
Target Start/End: Complemental strand, 53562433 - 53562135
Alignment:
| Q |
209 |
tcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacacctta |
308 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| |||||||| || |||||| |||| | || || || |||||| ||||||||||||||| ||||| |
|
|
| T |
53562433 |
tcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
53562334 |
T |
|
| Q |
309 |
acagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatc |
408 |
Q |
| |
|
|| | ||||| ||||| || || | ||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| | || |
|
|
| T |
53562333 |
actg----caacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc |
53562238 |
T |
|
| Q |
409 |
taccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactc |
508 |
Q |
| |
|
|| |||| | || ||| ||||| |||| | ||||||||||||||||||| |||||| ||||| || ||||||| ||||||||| |||||||| || |
|
|
| T |
53562237 |
taacacctttacgggtcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc |
53562138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 525
Target Start/End: Original strand, 38185265 - 38185584
Alignment:
| Q |
206 |
gcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacacc |
305 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||||||||||| || | || | ||||| ||| |||||||||| | ||||||| |
|
|
| T |
38185265 |
gcatcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaacatgccggcaagtttattctaccaaaacaccacctccaggccaacacc |
38185364 |
T |
|
| Q |
306 |
ttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaatta |
405 |
Q |
| |
|
|||| |||||||| ||| |||| ||| ||| |||| || ||| || | |||||||| |||||||| || |||||||| || ||||||||||| | |
|
|
| T |
38185365 |
ttaatagattccagcaatgcctcacaatccaacactgcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataa |
38185464 |
T |
|
| Q |
406 |
atctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaacca |
505 |
Q |
| |
|
|| | ||| | | | ||||||||| ||| | | | |||||||||||||||| | ||||||||||| || ||||||| |||||| ||||||| ||| |
|
|
| T |
38185465 |
gcctcactcccttacaaatctttttattataaaccgctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagcca |
38185564 |
T |
|
| Q |
506 |
ctccataagcttactccaga |
525 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
38185565 |
ctccataagctcacgccaga |
38185584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 523
Target Start/End: Original strand, 34821358 - 34821538
Alignment:
| Q |
343 |
cattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactc |
442 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||| || |||||||| || || |||||||| | || | ||| | || | ||||||||| || | | |
|
|
| T |
34821358 |
cattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataagcctcactcccttacgaatctttttattgtgaaccgc |
34821457 |
T |
|
| Q |
443 |
accattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactcca |
523 |
Q |
| |
|
|||||||||||| | |||||| ||||||| ||| ||||| |||| || ||||| || ||||||||||| ||||||||||| |
|
|
| T |
34821458 |
accattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccactccatgagcttactcca |
34821538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 43073753 - 43073787
Alignment:
| Q |
275 |
cctacccaaaaaccacctccaagacaacaccttaa |
309 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43073753 |
cctacccaacaaccacctccaagacaacaccttaa |
43073787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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