View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18152_low_2 (Length: 544)

Name: NF18152_low_2
Description: NF18152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18152_low_2
NF18152_low_2
[»] chr4 (6 HSPs)
chr4 (17-466)||(18152789-18153238)
chr4 (210-439)||(1785691-1785920)
chr4 (467-527)||(8311930-8311990)
chr4 (481-527)||(18319543-18319589)
chr4 (481-527)||(18399092-18399138)
chr4 (482-527)||(18396389-18396434)
[»] chr6 (2 HSPs)
chr6 (196-462)||(23937076-23937344)
chr6 (481-527)||(12108541-12108587)
[»] scaffold0002 (1 HSPs)
scaffold0002 (25-404)||(222478-222857)
[»] chr7 (5 HSPs)
chr7 (319-466)||(18637940-18638087)
chr7 (319-466)||(18604928-18605075)
chr7 (410-466)||(18651374-18651430)
chr7 (132-167)||(47586031-47586066)
chr7 (467-527)||(46147261-46147321)
[»] chr5 (2 HSPs)
chr5 (319-466)||(38578275-38578422)
chr5 (481-527)||(27572017-27572063)
[»] chr8 (4 HSPs)
chr8 (481-527)||(9012814-9012860)
chr8 (481-527)||(15272278-15272324)
chr8 (481-527)||(15452647-15452693)
chr8 (483-527)||(40436498-40436542)
[»] chr2 (2 HSPs)
chr2 (481-527)||(1331064-1331110)
chr2 (481-527)||(28790565-28790611)
[»] chr1 (4 HSPs)
chr1 (485-527)||(35980255-35980297)
chr1 (481-526)||(50471286-50471331)
chr1 (485-529)||(35980372-35980416)
chr1 (481-525)||(40095395-40095439)
[»] chr3 (2 HSPs)
chr3 (64-137)||(22998200-22998273)
chr3 (483-527)||(52632095-52632139)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Complemental strand, 18153238 - 18152789
Alignment:
Q  17 atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18153238 atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa 18153139  T
Q  117 gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18153138 gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa 18153039  T
Q  217 atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18153038 atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggttt 18152939  T
Q  317 gggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18152938 gggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgat 18152839  T
Q  417 tattggaggaacaatacctaaacctgtggatgctccagaatcttttcgat 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18152838 tattggaggaacaatacctaaacctgtggatgctccagaatcttttcgat 18152789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 210 - 439
Target Start/End: Original strand, 1785691 - 1785920
Alignment:
Q  210 tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785691 tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg 1785790  T
Q  310 gaggtttgggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaa 409  Q
    |||||||||||||||||||| |||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785791 gaggtttgggcgctcgagggattcaatgttgctaatattttacaagagatgttgacttataaatctgatcatattaaagctcgtcaagaagtactcggaa 1785890  T
Q  410 ctacgattattggaggaacaatacctaaac 439  Q
    ||||||||||| | |||| |||||| ||||    
T  1785891 ctacgattattagtggaaaaataccaaaac 1785920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 8311930 - 8311990
Alignment:
Q  467 aataatatctgattcaaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8311930 aataatatctgattcaaaccaaaccgatgtagtttaggttggatcggttggtgcggttttt 8311990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 18319589 - 18319543
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||  |||| |||| ||||||||||||||||||||    
T  18319589 caaaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 18319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 18399092 - 18399138
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||  |||| |||| ||||||||||||||||||||    
T  18399092 caaaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 18399138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 18396389 - 18396434
Alignment:
Q  482 aaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    ||||||||||||||| |||| |||| ||||||||||||| ||||||    
T  18396389 aaaccaaaccaatgtggtttgggttggatcggttggtgcagttttt 18396434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 196 - 462
Target Start/End: Complemental strand, 23937344 - 23937076
Alignment:
Q  196 attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaac 295  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23937344 attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaaggaagggtgaaacaaggaggacaac 23937245  T
Q  296 gggtaggcgaaatggaggtttgggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcata--ttaaagctcgt 393  Q
     ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||  |||    
T  23937244 tggtaggcaaaatggaggtttgggcgctcgaggggtttggtgttgctcatattttacaagagatgttgacttataaatctgatcatattttaaagtgcgt 23937145  T
Q  394 caagaagtactcggaactacgattattggaggaacaatacctaaacctgtggatgctccagaatctttt 462  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23937144 caagaagtactcagaactacgattattggaggaacaatacctaaacttgtggatgctccagaatctttt 23937076  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 12108587 - 12108541
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  12108587 caaaccaaaccaatgtggtttgcgttagatcggttggtgcagttttt 12108541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 25 - 404
Target Start/End: Original strand, 222478 - 222857
Alignment:
Q  25 gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa 124  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||   ||||||||| |||||||||||||||| |||||||| ||| |||    
T  222478 gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa 222577  T
Q  125 tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg 224  Q
    |||||||||||||||||||  | |  ||||| || |||||| ||||||| ||| | ||||| || ||||||||||||||||||||||| ||||| |||||    
T  222578 tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg 222677  T
Q  225 acgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggtttgggcgctc 324  Q
     ||||| | ||| |  ||  |||||||||||||||||||  ||| |||||| || || ||||| |||||||| ||||| |||||||| ||||||||  |     
T  222678 gcgttctactgggccctactcacttgttacacaacaaccggttagaggaagagccaagcaagggggacaacgagtaggagaaatggaagtttgggcttta 222777  T
Q  325 gaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtact 404  Q
    || || || |||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||||| |||||| ||||    
T  222778 gaaggatttggtgttgctcatattttacaagagatacttacttataaatctgaccatcttatagctcgccaagaaatact 222857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 319 - 466
Target Start/End: Complemental strand, 18638087 - 18637940
Alignment:
Q  319 gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta 418  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||    
T  18638087 gcgcttgaggggttcgatgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatta 18637988  T
Q  419 ttggaggaacaatacctaaacctgtggatgctccagaatcttttcgat 466  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  18637987 ttggaggaacaatacataaacatgtggatgctccataatcttttcgat 18637940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 319 - 466
Target Start/End: Original strand, 18604928 - 18605075
Alignment:
Q  319 gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta 418  Q
    ||||| |||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||| |    
T  18604928 gcgcttgaggggttcgatgttgcttttattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatca 18605027  T
Q  419 ttggaggaacaatacctaaacctgtggatgctccagaatcttttcgat 466  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  18605028 ttggaggaacaatacataaacatgtggatgctccataatcttttcgat 18605075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 18651430 - 18651374
Alignment:
Q  410 ctacgattattggaggaacaatacctaaacctgtggatgctccagaatcttttcgat 466  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  18651430 ctacgattattggaggaacaatacataaacatgtggatgctccataatcttttcgat 18651374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
Q  132 tggaagaacagggaatctttttgaacagcctgttat 167  Q
    ||||||||||||||||||||||||||||||||||||    
T  47586031 tggaagaacagggaatctttttgaacagcctgttat 47586066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 46147261 - 46147321
Alignment:
Q  467 aataatatctgattcaaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    ||||| ||||||  |||||||||||||||  ||||| ||| |||||||||||||| |||||    
T  46147261 aataaaatctgaaccaaaccaaaccaatgcggtttacgttggatcggttggtgcgattttt 46147321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 319 - 466
Target Start/End: Original strand, 38578275 - 38578422
Alignment:
Q  319 gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta 418  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||    
T  38578275 gcgcttgaggggttcgatgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatta 38578374  T
Q  419 ttggaggaacaatacctaaacctgtggatgctccagaatcttttcgat 466  Q
    || |||||||||||| | ||| ||||||||||||| ||||||||||||    
T  38578375 ttagaggaacaatacatcaacatgtggatgctccataatcttttcgat 38578422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 27572063 - 27572017
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||  |||| |||| ||||||||||||||||||||    
T  27572063 caaaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 27572017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 9012860 - 9012814
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||  |||| |||| ||||||||||||||||||||    
T  9012860 caaaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 9012814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 15272324 - 15272278
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||| |||| ||||| |||| ||||||||||||||||||||    
T  15272324 caaaccaaacaaatgcagtttgggttggatcggttggtgcggttttt 15272278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 15452693 - 15452647
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||| |||| ||||| |||| ||||||||||||||||||||    
T  15452693 caaaccaaacaaatgcagtttgggttggatcggttggtgcggttttt 15452647  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 40436498 - 40436542
Alignment:
Q  483 aaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||    
T  40436498 aaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 40436542  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 1331064 - 1331110
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||| |||| |||| |||| |||||||||||||||    
T  1331064 caaaccaaaccaatgtggtttgggttggatcagttggtgcggttttt 1331110  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Original strand, 28790565 - 28790611
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||||||| |||| |||  ||||||||||||||||||||    
T  28790565 caaaccaaaccaatgtggtttgggtcggatcggttggtgcggttttt 28790611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 35980297 - 35980255
Alignment:
Q  485 ccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    |||||||||||| |||| | |||||||||||||||||||||||    
T  35980297 ccaaaccaatgtggtttggtttagatcggttggtgcggttttt 35980255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 526
Target Start/End: Original strand, 50471286 - 50471331
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggtttt 526  Q
    |||||||||||||||  |||||| |||||||||||||||| |||||    
T  50471286 caaaccaaaccaatgcggtttagattagatcggttggtgccgtttt 50471331  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Complemental strand, 35980416 - 35980372
Alignment:
Q  485 ccaaaccaatgtagtttaggttagatcggttggtgcggtttttag 529  Q
    |||||||||||  |||| | |||||||||||||||||||||||||    
T  35980416 ccaaaccaatgcggtttggtttagatcggttggtgcggtttttag 35980372  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 40095439 - 40095395
Alignment:
Q  481 caaaccaaaccaatgtagtttaggttagatcggttggtgcggttt 525  Q
    |||||||||||||||| |||| | || ||||||||||||||||||    
T  40095439 caaaccaaaccaatgtggtttggattggatcggttggtgcggttt 40095395  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
Q  64 gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag 137  Q
    |||| |||| ||||||| |||||||| |||||| | ||  ||||||||||||| |||| ||||||| |||||||    
T  22998273 gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag 22998200  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 52632095 - 52632139
Alignment:
Q  483 aaccaaaccaatgtagtttaggttagatcggttggtgcggttttt 527  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||||||    
T  52632095 aaccaaaccaatgcagtttgggttggattggttggtgcggttttt 52632139  T

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