View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18152_low_4 (Length: 395)
Name: NF18152_low_4
Description: NF18152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18152_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 31188989 - 31188614
Alignment:
| Q |
16 |
caaagtcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgatt |
115 |
Q |
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| T |
31188989 |
caaagtcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgatt |
31188890 |
T |
|
| Q |
116 |
ttatcttatgtggaagtaactagtaagccgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctcca |
215 |
Q |
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| T |
31188889 |
ttatcttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctcca |
31188790 |
T |
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| Q |
216 |
aaaataatagcatcgaa-nnnnnnnnnaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggc |
314 |
Q |
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| T |
31188789 |
aaaataatagcatcgaattttttttttaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggc |
31188690 |
T |
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| Q |
315 |
agtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttttgtgcttcatgtttctgtgctcct |
390 |
Q |
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| T |
31188689 |
agtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttttgtgcttcatgtttctgtgttcct |
31188614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 31200796 - 31200445
Alignment:
| Q |
16 |
caaagtcattaacaattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgatt |
115 |
Q |
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| T |
31200796 |
caaagtcatgaacaattcataatgttatcatcttaaatcatttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgatt |
31200697 |
T |
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| Q |
116 |
ttatcttatgtggaagtaactagtaagccgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctcca |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31200696 |
ttatcttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctcca |
31200597 |
T |
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| Q |
216 |
aaaataatagcatcgaa-nnnnnnnnnaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggc |
314 |
Q |
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| T |
31200596 |
aaaataatagcatcgaattttttttttaggtgatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggc |
31200497 |
T |
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| Q |
315 |
agtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttt |
366 |
Q |
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| T |
31200496 |
agtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttt |
31200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
76 |
tatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
150 |
Q |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 31144869 - 31144770
Alignment:
| Q |
34 |
ataatgttatcatcttaa-atcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagt |
132 |
Q |
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| T |
31144869 |
ataatgttatcatctttataacctttagaagtttgttgctgcatatgctacaa-tggagaacatgttatactagaaaatatttttatcttatttggaagt |
31144771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 31225168 - 31225277
Alignment:
| Q |
29 |
aattcataatgttatcatcttaaatcctttagaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtgg |
128 |
Q |
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|||| ||||| ||| |||| || |||||||| ||||||| |||| || |||||||||| | |||||||||||||| |||| | |||||||||||||| |
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| T |
31225168 |
aatttataattttaacatcatatatcctttataagttggcgactgcataagctacaaatgaaaaacaagctatactacaaaa--agtttatcttatgtgg |
31225265 |
T |
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| Q |
129 |
aagtaactagta |
140 |
Q |
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| T |
31225266 |
aagcaactagta |
31225277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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