View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18152_low_5 (Length: 393)
Name: NF18152_low_5
Description: NF18152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18152_low_5 |
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| [»] chr1 (10 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 1843677 - 1843298
Alignment:
| Q |
14 |
aaaacaatcatctgccatcatccaatgctattagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaag |
113 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1843677 |
aaaacaatcatctgccatcatccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaat |
1843578 |
T |
|
| Q |
114 |
gctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcattaacctcattccctccaattcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1843577 |
gctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattcc |
1843478 |
T |
|
| Q |
214 |
atagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatctcttgtttgttttcttcat |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1843477 |
atagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcat |
1843378 |
T |
|
| Q |
314 |
tccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttcttctc |
393 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||| ||||||||||||||| |
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| T |
1843377 |
tccacaaaccatcttgaataacttcaaacacattatcttttttcaatcaagatagtaaattcattgcaagacttcttctc |
1843298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 1857686 - 1857310
Alignment:
| Q |
16 |
aacaatcatctgccatcatccaatgctattagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaaggc |
115 |
Q |
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||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| || |
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| T |
1857686 |
aacaatcatctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatccgatatctccatgtttgttgctatcaccaggttcataaatgc |
1857587 |
T |
|
| Q |
116 |
tagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcattaacctcattccctccaattccat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857586 |
tagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccat |
1857487 |
T |
|
| Q |
216 |
agccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatctcttgtttgttttcttcattc |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1857486 |
agccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattc |
1857387 |
T |
|
| Q |
316 |
cacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttcttct |
392 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857386 |
cacaaaccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct |
1857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 1869284 - 1868908
Alignment:
| Q |
16 |
aacaatcatctgccatcatccaatgctattagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaaggc |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1869284 |
aacaatcatctgccatcatccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaaagc |
1869185 |
T |
|
| Q |
116 |
tagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcattaacctcattccctccaattccat |
215 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869184 |
tagatgatgattcatgaagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccat |
1869085 |
T |
|
| Q |
216 |
agccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatctcttgtttgttttcttcattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1869084 |
agccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattc |
1868985 |
T |
|
| Q |
316 |
cacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttcttct |
392 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||| |
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| T |
1868984 |
cacaaaccatcttgaataacttcaaatacattatcttttttcaatcaagatagtaaatgcattgcaagacttcttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 96 - 393
Target Start/End: Original strand, 1815437 - 1815735
Alignment:
| Q |
96 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatcgttgatccaagagtgcttattcattaa |
194 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||| |||||| |
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| T |
1815437 |
atcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaa |
1815536 |
T |
|
| Q |
195 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatc |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1815537 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatc |
1815636 |
T |
|
| Q |
295 |
tcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttcttctc |
393 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
1815637 |
acttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctc |
1815735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 386
Target Start/End: Original strand, 9161353 - 9161550
Alignment:
| Q |
189 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
288 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||| ||| |||||| |
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|
| T |
9161353 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctcc |
9161452 |
T |
|
| Q |
289 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
386 |
Q |
| |
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| ||||| | |||||||| ||||| | |||||| |||||||| ||||||| | |||| | ||| || ||||| | ||| |||||||||||||| |
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| T |
9161453 |
ttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 386
Target Start/End: Original strand, 9199746 - 9199943
Alignment:
| Q |
189 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
288 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| ||| |||||| |
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| T |
9199746 |
cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctcc |
9199845 |
T |
|
| Q |
289 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
386 |
Q |
| |
|
| ||||||| |||||||| |||| | | || ||| |||||||| | ||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
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|
| T |
9199846 |
ttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 386
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
191 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccat |
290 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||| ||| |||||| | |
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|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
291 |
gatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
386 |
Q |
| |
|
||||||| ||||| || |||||| | || ||| |||||||| ||||||| | ||||| | ||| || ||||| | || |||||||||||||| |
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| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 386
Target Start/End: Original strand, 9218262 - 9218459
Alignment:
| Q |
189 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
288 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| || |||||| |
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| T |
9218262 |
cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagaaacctcc |
9218361 |
T |
|
| Q |
289 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
386 |
Q |
| |
|
| ||||||| |||||||| ||||| | || ||| |||||||| | ||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
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|
| T |
9218362 |
ttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9218459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 346
Target Start/End: Original strand, 9229131 - 9229304
Alignment:
| Q |
173 |
tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc |
272 |
Q |
| |
|
|||||| |||||| | ||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || || |
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| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
273 |
aagaacagccacctccatgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacat |
346 |
Q |
| |
|
||||| ||| || ||| | ||||| | ||||| || |||||| | |||||| |||||| ||||||| |||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacat |
9229304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 386
Target Start/End: Original strand, 9170179 - 9170376
Alignment:
| Q |
189 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
288 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| |||||| | | ||||||| ||| |||||| |
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|
| T |
9170179 |
cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatagcaacctcc |
9170278 |
T |
|
| Q |
289 |
atgatctcttgtttgttttcttcattc-cacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
386 |
Q |
| |
|
| ||||||| ||||| || || ||| || || ||| |||||||| ||||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
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|
| T |
9170279 |
ttaatctctttcttgttatcatcgttcacaaat-ccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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