View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18152_low_8 (Length: 223)
Name: NF18152_low_8
Description: NF18152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18152_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 43918188 - 43918308
Alignment:
| Q |
14 |
cataggcaggatatatattcgatgacacgaggagtgcaacaggagctaacatttatattacctgcaacatctcaacaagaagaataatgcgctcagcatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43918188 |
cataggcaggatatatattcgatgacacgaggagtgcaacaggagctaacatttatattacctgcaacatctcaacaagaagaataatgcgctcagcatg |
43918287 |
T |
|
| Q |
114 |
cttacggcaatttagacttaa |
134 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43918288 |
cttacggcaatttagacttaa |
43918308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 39128824 - 39128772
Alignment:
| Q |
64 |
atttatattacctgcaacatctcaacaagaagaataatgcgctcagcatgctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39128824 |
atttatattacctgcaacatctcaacaagaagaataatacgctcagcatgctt |
39128772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University