View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_10 (Length: 535)
Name: NF18153_high_10
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 142 - 517
Target Start/End: Original strand, 49205898 - 49206277
Alignment:
| Q |
142 |
ttatttctgaccatgcatgtgcaaaatatattaatgcatttatgnnnnnnnnnnnnaggggtatgcatttactacttattacaatacaaaagtggtcctt |
241 |
Q |
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| T |
49205898 |
ttatttctgaccatgcatgtgcaaaatatattaatgcatttacgttttttctttttaggggtatgcatttactacttattacaatacaaaagtggtcctt |
49205997 |
T |
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| Q |
242 |
ctataacatataagggaaatggggattattcaaaataccacgcatggtgtattagtgtaccatatatatgacacatcgtgtattgtttgtaaaagactaa |
341 |
Q |
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| T |
49205998 |
ctataacatataatggaaatggggattattcaaaatacctcgcatggtgtattagtgtaccatatatatgacacatcgtgtattgtttgtaaaagactaa |
49206097 |
T |
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| Q |
342 |
aagtagtcnnnnnnnn----aagcggattgaatatatcatatattaaaatcaggactgtcaaatggactcctgataaaataaaataaaaacgtaaatttt |
437 |
Q |
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| T |
49206098 |
aagtagtcttttttttttttaagcggattgaatatatcatatattaaaatcaagactgtcaaatggactcctgataaaataaaataaaaacgtaaatttt |
49206197 |
T |
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| Q |
438 |
tcaaagagtcgtcttctatttaaattatcaataatataaaatttagcggttaggatgataaaaatcagacagaggagaat |
517 |
Q |
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| T |
49206198 |
tcaaagagtcgtcttctatttaaattatcaataatataaaatttagcggttaggatgataaaaatcagacagaggagaat |
49206277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 49205733 - 49205872
Alignment:
| Q |
4 |
agacaactttaaagagctactactttgttttattatcaattttattttgatatgagaacnnnnnnntgaaagttaatgacgttggacttaaacttgctta |
103 |
Q |
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| T |
49205733 |
agacaactttaaagagctactactttgttttattatcaattttattttgatatgagaacaaaaaaatgaaagttaatgacgttggacttaaacttgctta |
49205832 |
T |
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| Q |
104 |
acaagttattcataaatgggttctggtaataatagccttt |
143 |
Q |
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| T |
49205833 |
acaagttattcataaatgggttctggtaataatagccttt |
49205872 |
T |
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