View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_11 (Length: 523)
Name: NF18153_high_11
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Complemental strand, 31840247 - 31839759
Alignment:
| Q |
11 |
ggtagccaatggtggccaagccttggtaggacctggactaagacaagggatggaagaaactggtcaagtaggtgaacaatataattacttacaccaaaac |
110 |
Q |
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| T |
31840247 |
ggtagccaatggtggccaagccttggtaggacctggactaagacaggggatggaagaaactggtcaagtaggtgaacaatataattacttacaccaaaac |
31840148 |
T |
|
| Q |
111 |
agctaccttccccatttgttaatttggttttatatatgtacatgccacaaccaatatgttcattatgaaagcaaccttaatttggtggcagagctatacg |
210 |
Q |
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| T |
31840147 |
agctaccttccccatttgttaatttggttttatatatgtacatgccacaaccaatatgttcattatggaagcaaccttaatttggtggcagagctatacg |
31840048 |
T |
|
| Q |
211 |
acattcaccattcacgagatttcaaagttacatac----aaaaacatcatgaaaattgaaaacccagtttcatcaattaatttcaattaaaatatcaaat |
306 |
Q |
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| T |
31840047 |
acattcaccattcacgagatttgaaagttacatacaattaaaaacatcatgaaaattgaaaacccagtttca----------tcaattaaaatatcaaat |
31839958 |
T |
|
| Q |
307 |
tctctnnnnnnnnntatgaataagtaggaattaggctcctaacaacaagaccgagatacaaataagactaaaagcctttatgaaagacaacatatatagt |
406 |
Q |
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| T |
31839957 |
tctct---aaaaaatatgaataagtaggaattaggctcctaacaacaagaccgagatacaaataagactaaaagcctctaagaaagacaacatatatagt |
31839861 |
T |
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| Q |
407 |
tc--atagctatcaaccaatgttaaggcaaaagaagcaagaataatatcaaaagtacgatcacaactagggaaggacctatttgcaggcatatgtggaca |
504 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31839860 |
tcctatagctatcaaccaatgttaaggcaaaagaagcaagaataatatcaaaagtacgatcacaactagggaaggacctatttgcaggcatatggggaca |
31839761 |
T |
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