View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_high_12 (Length: 523)
Name: NF18153_high_12
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 31797844 - 31797622
Alignment:
| Q |
13 |
cacagagacaagtaatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31797844 |
cacagagacaagtaatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagat |
31797745 |
T |
|
| Q |
113 |
tatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactatatcatccaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31797744 |
tatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactaaatcatccaa |
31797645 |
T |
|
| Q |
213 |
tatgtaaaattgagcttatgaaa |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31797644 |
tatgtaaaattgagcttatgaaa |
31797622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 31787378 - 31787308
Alignment:
| Q |
44 |
aagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagatta |
114 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31787378 |
aagatcggacatttcaattatatgcacgaagatatgatttctcacaagaactttggagttgaaagagatta |
31787308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 453
Target Start/End: Complemental strand, 31786930 - 31786851
Alignment:
| Q |
371 |
gagtctgccttgcaccgcactcatacctttaagcccattttgaaaaggtacattataaatttcgttcagctaatttcaaggaa |
453 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| ||| |||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
31786930 |
gagtttgccttgcactgcactcctacctttaagctcatcttgaaaaggtacat---aacttgggttcagctaatttcaaggaa |
31786851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 31787210 - 31787163
Alignment:
| Q |
186 |
accataagtattcactatatcatccaatatgtaaaattgagcttatga |
233 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| | ||||||| |
|
|
| T |
31787210 |
accataagtattcactatatcatcaaataggtaaaatttatcttatga |
31787163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University