View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_13 (Length: 508)
Name: NF18153_high_13
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 42229728 - 42230085
Alignment:
| Q |
17 |
actattatacatttgctatgcattatgaataggttggcttgcaagcagatacacataggaggacatagaggatggaggctgaagatggtcgaggcattta |
116 |
Q |
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| T |
42229728 |
actataatacatttgctatgcattatgaataggttggcttgcaagcagatacacataggaggacatagaggatggaggctgaagatggtcgaggcattta |
42229827 |
T |
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| Q |
117 |
taatcatactaacattcacacaattgttgtgcttattgctgacgcatgcaggactgtacaatagcagatatggtccaggttatcgtgacactgactatgg |
216 |
Q |
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| T |
42229828 |
taatcatactaacattcacacaattgttgtgcttattgctgacccatgcaggactgtacaatagcagatatggtccaggttatcgtgacactgactatgg |
42229927 |
T |
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| Q |
217 |
tgttggaggaggagctactggagatccaatgcacaagggtggtcctgttggtggcacacgtgtttaaataaacatcattatccatataactacactttgt |
316 |
Q |
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| T |
42229928 |
tgttggaggaggagctactggagatccaatgcacaagggtggtcctgttggtggcactcgtgtttaaataaatatcattatccatataactacactttgt |
42230027 |
T |
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| Q |
317 |
ttcttg-tttttaataatattgtagtctcctagtttgggacacgggactatgttcctg |
373 |
Q |
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| T |
42230028 |
ttcttgttttttaataatattgtagtttcctagtttgggacacgggactatgttcctg |
42230085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 401 - 502
Target Start/End: Original strand, 42230113 - 42230214
Alignment:
| Q |
401 |
gggtttgttgtatgaagagtgtcactttgtagcattacgttgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
500 |
Q |
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| T |
42230113 |
gggtttgttgtatgaagagtgtcactttgtagcattacattgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
42230212 |
T |
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| Q |
501 |
ct |
502 |
Q |
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| T |
42230213 |
ct |
42230214 |
T |
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