View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_high_14 (Length: 506)
Name: NF18153_high_14
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_14 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 4921755 - 4921261
Alignment:
| Q |
1 |
tttgggtgagaaagctggcagtggagttcaatttcattcttgaacgattctttcatgaatgtatttgttatccgcaacaatgctattggataatcatttt |
100 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
4921755 |
tttggatgacaaatctggcagtggagttcaatttcattcttgaacgtttctttcatgtatgtatcttttatccgcaacaatgctattggataatcatttt |
4921656 |
T |
|
| Q |
101 |
caccattatatttgacataacctttgtacactatattgccgcatatttctccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| | || || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
4921655 |
caccattatatttgacatagcctttgtagactatattgtagtttacttgtccaatttttcgatttttatcaaagttattggtagctttcttaagatcgtc |
4921556 |
T |
|
| Q |
201 |
cagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatatttcccacacga |
300 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
4921555 |
cagagaaaactcatggcatagttcttttataaatgttgaacattgtttcttggacgaacttctacgctttgagtattttgcaagcatatttcccacacga |
4921456 |
T |
|
| Q |
301 |
attccgcttgatagccaatgataaccaagggaggtacnnnnnnntcaagcctacatttcatcataaaacatgaaaagaagcaaaacgacggaaacacgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4921455 |
attccgcttgatagccaatgataaccaagggaagtacaaaaaaatcaagcctacatttcatcataaaacatgaaaagaagcaaaacgacggacacacgtt |
4921356 |
T |
|
| Q |
401 |
gggaaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattctaatgtatggtttttatggtttattgatatt |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4921355 |
gggaaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattctaatgtatggtttttatggtttattgatatt |
4921261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 4927997 - 4927510
Alignment:
| Q |
1 |
tttgggtgagaaagctggcagtggagttcaatttcattcttgaacgattctttcatgaatgtatttgttatccgcaacaatgctattggataatcatttt |
100 |
Q |
| |
|
||||||||| ||||||||||| || |||| |||||||||||||| || | | | ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4927997 |
tttgggtgacaaagctggcagaggtgttctatttcattcttgaaaccttgtcccctaaatacatctgttatccgcaacaatgctattggataatcatttt |
4927898 |
T |
|
| Q |
101 |
caccattatatttgacataacctttgtacactatattgccgcatatttctccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4927897 |
caccattatatttgacatagcctttgtagactatatcgcccattacttttccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtc |
4927798 |
T |
|
| Q |
201 |
cagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatatttcccacacga |
300 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
4927797 |
cagagaaaactcatggcatagctcatttataaatgttgaacattgtttcttggacgaacttctacgctttgagtattttgcaagcatatttcccacacga |
4927698 |
T |
|
| Q |
301 |
attccgcttgatagccaatgataaccaagggaggtacnnnnnnntcaagcctacatttcatcataaaacatg----------------------aaaaga |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
4927697 |
attccgcttgatagccaatgataaccaagggaagtacaaaaaaatcaagcctacatttcatcataaaacatgaatgcctcttagaaaatgaactaaaaga |
4927598 |
T |
|
| Q |
379 |
agcaaaacgacggaaacacgttggg-aaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattct |
465 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4927597 |
agcaaaacgacggaaacacgttgggaaaaaaatgacatcatgggtaaaatgtaagtatcaaaccattttctaagctaaaactgattct |
4927510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 78 - 295
Target Start/End: Original strand, 4904366 - 4904586
Alignment:
| Q |
78 |
caatgctattggataatcattttcaccattatatttgacataacctttgtacactatattgccgcatatttctccaatttttcgattttcatcaaagtta |
177 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||| || | || ||||| ||||||| |||||||||||||| |
|
|
| T |
4904366 |
caatgctactggatactcattttcaccattatgtttgagataacctttgtacactatactgtatagtgattgtccaagttttcgagtttcatcaaagtta |
4904465 |
T |
|
| Q |
178 |
ttggtagctttcttaagctcgtccagagaaaattgatggcatagctcttttataaatgttgaacat---tgtttcttggacgaacttttatgctttgagt |
274 |
Q |
| |
|
||| | | ||||||||| || || |||||||||||||||||||| ||||||||| |||||| |||| || ||| |||| ||||||||||| ||||||| |
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|
| T |
4904466 |
ttgcttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttatggtttgagt |
4904565 |
T |
|
| Q |
275 |
attttgcaagcatatttccca |
295 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
4904566 |
attttacaggcatatttccca |
4904586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 4908213 - 4908508
Alignment:
| Q |
1 |
tttgggtgagaaagctggcagtggagttcaatttcattcttgaacgattctttcatgaa-tgtatttgttatccgcaacaatgctattggataatcattt |
99 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||||||||| | | ||||| || | ||| | | ||||| || |||||||||||||||| || |
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|
| T |
4908213 |
tttgggtgatgaagctggcagttgagttcaatttccttcttgaact-tccattcattaaatatatgtatcatccgtttcactgctattggataatcagtt |
4908311 |
T |
|
| Q |
100 |
tcaccattatatttgacataacctttgtacactatattgccgcatatttctccaatttttcgattttcatcaaagttattggtagctttcttaagctcgt |
199 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || | || || ||| || ||| ||| ||||||||||| |||| ||||||||| || | |
|
|
| T |
4908312 |
tcaccattatgtttgagataacctttgtaagctatactgaattctgttaaccctattcttagatgttcgtcaaagttattagtagatttcttaagatcat |
4908411 |
T |
|
| Q |
200 |
ccagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgcaagcatatttcccac |
296 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||| | ||||||||||||| | ||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
4908412 |
ccagagaaaattgatggcatcgctcttctataacagttggatattgtttcttggaaggacttttacgctttgaatattttacaagcatatttcccac |
4908508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 83 - 294
Target Start/End: Complemental strand, 5821958 - 5821747
Alignment:
| Q |
83 |
ctattggataatcattttcaccattatatttgacataacctttgtacactatattgccgcatatttctccaatttttcgattttcatcaaagttattggt |
182 |
Q |
| |
|
|||||||||| ||| |||||||| ||| ||||| ||||||||||||||||||| || | || || ||||||||||| |||| | ||||||||||| |
|
|
| T |
5821958 |
ctattggatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcgaagttattggt |
5821859 |
T |
|
| Q |
183 |
agctttcttaagctcgtccagagaaaattgatggcatagctcttttataaatgttgaacattgtttcttggacgaacttttatgctttgagtattttgca |
282 |
Q |
| |
|
| |||| |||| || || |||||||||||||| |||||||||| ||||| ||||| ||||| ||| ||||| ||||||| |||||| || |||||| || |
|
|
| T |
5821858 |
tgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactttcatgcttcgaatattttaca |
5821759 |
T |
|
| Q |
283 |
agcatatttccc |
294 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
5821758 |
aacatctttccc |
5821747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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