View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_16 (Length: 474)

Name: NF18153_high_16
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_16
NF18153_high_16
[»] chr1 (3 HSPs)
chr1 (73-459)||(5129589-5129974)
chr1 (1-44)||(5129524-5129567)
chr1 (322-414)||(26324491-26324584)
[»] chr5 (8 HSPs)
chr5 (304-405)||(8527890-8527991)
chr5 (279-406)||(8640456-8640583)
chr5 (183-396)||(8643414-8643630)
chr5 (304-384)||(8636121-8636201)
chr5 (306-405)||(8534468-8534567)
chr5 (304-357)||(8549058-8549111)
chr5 (304-357)||(9075311-9075364)
chr5 (279-343)||(9002289-9002353)
[»] chr4 (1 HSPs)
chr4 (304-405)||(9442057-9442158)
[»] chr7 (1 HSPs)
chr7 (304-404)||(48362698-48362797)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 73 - 459
Target Start/End: Original strand, 5129589 - 5129974
Alignment:
Q  73 aacaaggtagcaagtcattctccgaaaaccatagataatgactaatgaacagagattaaattttacaataaaaagaaaagacatcatttgcatcctaaaa 172  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  5129589 aacaaggtagcaagtcattctctgaaaaccatagataatgactaatgaacagagattaaagtttacaa-aaaaagaaaagacatcattttcatcctaaaa 5129687  T
Q  173 caagaactttcataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaagtctcaccggaggagggtacctgtcaagagtc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129688 caagaactttcataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaagtctcaccggaggagggtacctgtcaagagtc 5129787  T
Q  273 atattgaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaa 372  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5129788 atattaaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaa 5129887  T
Q  373 ttgtactaagcaggagtcagaataccaatcaatgagaaaacacacatacagtactattcttaagaagtgggctcttcgttgaattct 459  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5129888 ttgtactaagcaggagtcagaataccaatcaatgagaaaatacacatacaatactattcttaagaagtgggctcttcgttgaattct 5129974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5129524 - 5129567
Alignment:
Q  1 atgaagaaaagcatatataagacatcaggaaactgaatgataaa 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5129524 atgaagaaaagcatatataagacatcaggaaactgaatgataaa 5129567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 26324584 - 26324491
Alignment:
Q  322 tataaaataagaccaatattacgtaacaaagcctaaat-aatgtgcctaaaattgtactaagcaggagtcagaataccaatcaatgagaaaaca 414  Q
    |||||||||| ||||||||||| |||||||| |||| | ||  | |||||||||||| |||||| | ||||||||||||||||||  |||||||    
T  26324584 tataaaataacaccaatattacataacaaagtctaagttaacatacctaaaattgtaataagcaagggtcagaataccaatcaatacgaaaaca 26324491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 8527890 - 8527991
Alignment:
Q  304 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaataccaatca 403  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  | |||||||||||| |||||||| ||||||||||||||||    
T  8527890 ttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaggggtcagaataccaatca 8527989  T
Q  404 at 405  Q
    ||    
T  8527990 at 8527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 8640456 - 8640583
Alignment:
Q  279 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtac 378  Q
    |||||||||||||  ||| ||||  ||||| |||||||||||||||||||||| ||||||  |||| ||||||| |||| ||| |||||||||||||||     
T  8640456 aagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaaattgtag 8640555  T
Q  379 taagcaggagtcagaataccaatcaatg 406  Q
    |||||||| |||| ||||| ||||||||    
T  8640556 taagcaggggtcaaaatacaaatcaatg 8640583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 183 - 396
Target Start/End: Original strand, 8643414 - 8643630
Alignment:
Q  183 cataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaag--tctcaccg---gaggagggtacctgtcaagagtcat-at 276  Q
    ||||||||| ||| ||||||| ||  | |||| ||| ||||||||||||||||||||||  |||||| |   ||||||||||| |||||||  |||| ||    
T  8643414 cataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggaggagggtacttgtcaag--tcatcat 8643511  T
Q  277 tgaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgt 376  Q
    | ||||||||||||| ||||    |  |||||||||||||||||||||||||||| |||||||||||  || | ||||||| ||| ||||||||||||||    
T  8643512 tcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgt 8643610  T
Q  377 actaagcaggagtcagaata 396  Q
    | || ||| | |||||||||    
T  8643611 agtatgcaagggtcagaata 8643630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 8636121 - 8636201
Alignment:
Q  304 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagca 384  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| ||||| | |||||| |||||||||||| ||||||    
T  8636121 ttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaattgtattaagca 8636201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 405
Target Start/End: Original strand, 8534468 - 8534567
Alignment:
Q  306 aaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaataccaatcaat 405  Q
    |||||||| ||||||||||||||||| ||||||||||| | || ||| |||| |||  | |||||||||||| |||||| | ||||||||| ||||||||    
T  8534468 aaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattgtaataagcaagggtcagaataacaatcaat 8534567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 8549111 - 8549058
Alignment:
Q  304 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaa 357  Q
    ||||| ||||||| |||||| ||||||| ||||||||||| |||||||| ||||    
T  8549111 ttaaactttgcacgcctatacaaaataacaccaatattacataacaaaggctaa 8549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 9075364 - 9075311
Alignment:
Q  304 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaa 357  Q
    |||||||||||||||||||||||||||| | || ||||||  ||||||| ||||    
T  9075364 ttaaaatttgcacacctatataaaataacaacagtattacacaacaaagtctaa 9075311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 9002289 - 9002353
Alignment:
Q  279 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattac 343  Q
    |||||||||||||  ||| ||||  ||||| |||||||||||||| |||| || |||||||||||    
T  9002289 aagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattac 9002353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 9442057 - 9442158
Alignment:
Q  304 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaataccaatca 403  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  | |||||||||||| |||||| | ||||||||||||||||    
T  9442057 ttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaataccaatca 9442156  T
Q  404 at 405  Q
    ||    
T  9442157 at 9442158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 48362797 - 48362698
Alignment:
Q  304 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaataccaatca 403  Q
    |||| ||||||||||||||||||| ||| || |||||||| ||||| || || | |||  |  ||||||||||| || ||||| ||||||| ||||||||    
T  48362797 ttaatatttgcacacctatataaa-taacacgaatattacataacatagtcttagtaacataactaaaattgtaatacgcaggggtcagaaaaccaatca 48362699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University