View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_18 (Length: 458)

Name: NF18153_high_18
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_18
NF18153_high_18
[»] chr5 (38 HSPs)
chr5 (12-440)||(38055945-38056362)
chr5 (220-289)||(29046012-29046081)
chr5 (220-280)||(6476790-6476850)
chr5 (226-287)||(234686-234747)
chr5 (211-268)||(235596-235653)
chr5 (220-289)||(4084863-4084932)
chr5 (210-275)||(19128767-19128832)
chr5 (222-286)||(29087911-29087975)
chr5 (210-289)||(14478904-14478983)
chr5 (220-275)||(28705878-28705933)
chr5 (211-268)||(236919-236976)
chr5 (226-275)||(237826-237875)
chr5 (224-289)||(1554086-1554151)
chr5 (226-275)||(19359701-19359750)
chr5 (224-268)||(7632099-7632143)
chr5 (220-264)||(10554555-10554599)
chr5 (220-268)||(27364486-27364534)
chr5 (210-289)||(17071783-17071862)
chr5 (220-267)||(28705170-28705217)
chr5 (226-289)||(43510215-43510278)
chr5 (210-268)||(17071228-17071286)
chr5 (210-268)||(34600265-34600323)
chr5 (226-275)||(19360481-19360530)
chr5 (213-270)||(20854897-20854954)
chr5 (224-268)||(1281840-1281884)
chr5 (224-264)||(1283503-1283543)
chr5 (229-268)||(1283533-1283572)
chr5 (229-268)||(10554526-10554565)
chr5 (225-268)||(25858214-25858257)
chr5 (217-267)||(22799756-22799806)
chr5 (226-260)||(27363779-27363813)
chr5 (210-280)||(34600820-34600890)
chr5 (222-268)||(34709038-34709084)
chr5 (222-268)||(36038699-36038745)
chr5 (224-268)||(22798905-22798949)
chr5 (224-276)||(33005517-33005569)
chr5 (220-268)||(38056798-38056846)
chr5 (225-289)||(38057599-38057663)
[»] chr6 (19 HSPs)
chr6 (12-244)||(4940042-4940273)
chr6 (156-289)||(11434392-11434524)
chr6 (211-289)||(26529503-26529581)
chr6 (211-275)||(10171273-10171337)
chr6 (208-289)||(10171953-10172034)
chr6 (210-268)||(12344898-12344956)
chr6 (208-268)||(26528827-26528887)
chr6 (217-275)||(19310998-19311056)
chr6 (224-289)||(33436277-33436342)
chr6 (220-268)||(8488473-8488521)
chr6 (222-289)||(19322965-19323033)
chr6 (220-268)||(19323766-19323814)
chr6 (222-280)||(9441229-9441287)
chr6 (224-274)||(19311830-19311880)
chr6 (220-275)||(18227729-18227783)
chr6 (217-268)||(33435344-33435395)
chr6 (210-268)||(3623179-3623237)
chr6 (225-275)||(8489284-8489334)
chr6 (220-264)||(5861894-5861938)
[»] chr7 (47 HSPs)
chr7 (170-268)||(3772476-3772574)
chr7 (167-285)||(45931164-45931282)
chr7 (220-289)||(26636086-26636155)
chr7 (184-289)||(37949588-37949693)
chr7 (220-290)||(7668464-7668534)
chr7 (220-288)||(25342481-25342549)
chr7 (184-268)||(30661419-30661503)
chr7 (222-289)||(30660576-30660643)
chr7 (220-275)||(46428184-46428239)
chr7 (221-275)||(25599019-25599073)
chr7 (220-268)||(25343307-25343355)
chr7 (170-289)||(18977720-18977838)
chr7 (197-276)||(25343216-25343295)
chr7 (222-289)||(46428819-46428886)
chr7 (220-274)||(26636860-26636914)
chr7 (222-268)||(37950469-37950515)
chr7 (226-275)||(45099899-45099948)
chr7 (224-268)||(13785597-13785641)
chr7 (220-268)||(19067641-19067689)
chr7 (220-268)||(24389616-24389664)
chr7 (220-268)||(27948450-27948498)
chr7 (224-268)||(43065120-43065164)
chr7 (217-268)||(45161973-45162024)
chr7 (220-262)||(3027984-3028026)
chr7 (221-274)||(3903340-3903393)
chr7 (220-289)||(21496983-21497052)
chr7 (220-289)||(37706411-37706480)
chr7 (220-277)||(40273555-40273612)
chr7 (224-268)||(1417612-1417656)
chr7 (220-268)||(3029198-3029246)
chr7 (220-268)||(16664125-16664173)
chr7 (220-268)||(17638485-17638533)
chr7 (220-268)||(19068395-19068443)
chr7 (224-268)||(38225979-38226023)
chr7 (224-268)||(47719708-47719752)
chr7 (221-268)||(24719339-24719386)
chr7 (225-268)||(31278159-31278202)
chr7 (210-268)||(3219536-3219594)
chr7 (222-268)||(14686135-14686181)
chr7 (226-268)||(37395505-37395547)
chr7 (225-275)||(38225297-38225347)
chr7 (222-275)||(25599821-25599874)
chr7 (224-268)||(3688388-3688432)
chr7 (224-268)||(14305094-14305138)
chr7 (224-264)||(24453730-24453770)
chr7 (226-262)||(31277433-31277469)
chr7 (225-289)||(45099121-45099185)
[»] scaffold0086 (1 HSPs)
scaffold0086 (167-268)||(8238-8339)
[»] chr4 (55 HSPs)
chr4 (167-275)||(53148559-53148666)
chr4 (210-289)||(47688469-47688548)
chr4 (199-289)||(30573688-30573778)
chr4 (220-280)||(47785799-47785859)
chr4 (210-289)||(8247680-8247759)
chr4 (210-268)||(53732440-53732498)
chr4 (210-275)||(8248510-8248575)
chr4 (210-275)||(8266175-8266240)
chr4 (220-276)||(9365166-9365222)
chr4 (220-275)||(20774180-20774235)
chr4 (226-289)||(53772791-53772854)
chr4 (226-280)||(2444365-2444419)
chr4 (184-253)||(7841811-7841880)
chr4 (220-264)||(16903643-16903687)
chr4 (220-276)||(24374786-24374842)
chr4 (220-268)||(26147032-26147080)
chr4 (208-268)||(32089601-32089661)
chr4 (225-289)||(44469476-44469540)
chr4 (208-268)||(56262483-56262543)
chr4 (221-268)||(599302-599349)
chr4 (220-271)||(40348143-40348194)
chr4 (225-268)||(52871303-52871346)
chr4 (224-267)||(55976172-55976215)
chr4 (210-268)||(8265366-8265424)
chr4 (208-266)||(9365804-9365862)
chr4 (225-275)||(31329722-31329772)
chr4 (213-267)||(53733125-53733179)
chr4 (210-268)||(55001430-55001488)
chr4 (210-255)||(5046002-5046047)
chr4 (222-275)||(7841542-7841595)
chr4 (220-268)||(11938716-11938764)
chr4 (220-268)||(19080390-19080438)
chr4 (211-259)||(53733722-53733770)
chr4 (224-268)||(53773590-53773634)
chr4 (225-268)||(3654520-3654563)
chr4 (224-275)||(24158824-24158875)
chr4 (225-268)||(42882686-42882729)
chr4 (224-259)||(55976959-55976994)
chr4 (222-268)||(2446163-2446209)
chr4 (229-275)||(16903677-16903723)
chr4 (226-268)||(19550291-19550333)
chr4 (222-264)||(43146650-43146692)
chr4 (225-291)||(44791706-44791772)
chr4 (210-268)||(47687914-47687972)
chr4 (169-259)||(56263022-56263111)
chr4 (211-268)||(7842520-7842577)
chr4 (220-289)||(11939441-11939510)
chr4 (222-275)||(40495093-40495146)
chr4 (220-289)||(53147855-53147924)
chr4 (220-276)||(1465317-1465373)
chr4 (220-268)||(1866348-1866396)
chr4 (224-268)||(24551927-24551971)
chr4 (220-268)||(26159621-26159669)
chr4 (225-257)||(32088835-32088867)
chr4 (224-268)||(55000692-55000736)
[»] chr3 (43 HSPs)
chr3 (169-253)||(44699881-44699965)
chr3 (208-275)||(52266441-52266508)
chr3 (221-274)||(265099-265152)
chr3 (220-289)||(41458017-41458086)
chr3 (220-289)||(46150729-46150798)
chr3 (208-280)||(48507020-48507092)
chr3 (220-289)||(31114928-31114994)
chr3 (209-268)||(31974656-31974715)
chr3 (184-259)||(48413333-48413407)
chr3 (224-275)||(48648201-48648252)
chr3 (226-289)||(55373712-55373775)
chr3 (222-276)||(14871150-14871204)
chr3 (211-264)||(17605715-17605768)
chr3 (224-268)||(17603173-17603217)
chr3 (225-289)||(20213536-20213600)
chr3 (224-268)||(21727533-21727577)
chr3 (220-267)||(981673-981720)
chr3 (220-275)||(45081403-45081458)
chr3 (220-287)||(52281752-52281819)
chr3 (226-280)||(30222104-30222158)
chr3 (225-270)||(11652296-11652341)
chr3 (220-273)||(37520561-37520614)
chr3 (222-275)||(37988220-37988273)
chr3 (224-289)||(48765074-48765139)
chr3 (226-275)||(52605489-52605538)
chr3 (225-289)||(10847914-10847978)
chr3 (199-275)||(48764475-48764551)
chr3 (224-288)||(51827498-51827562)
chr3 (220-259)||(13477778-13477817)
chr3 (224-259)||(17603965-17604000)
chr3 (221-268)||(31115600-31115647)
chr3 (226-289)||(40872814-40872877)
chr3 (208-271)||(48506440-48506502)
chr3 (208-267)||(52282400-52282459)
chr3 (225-275)||(13477055-13477105)
chr3 (225-267)||(20212986-20213028)
chr3 (226-268)||(37987238-37987280)
chr3 (220-253)||(29856683-29856716)
chr3 (225-286)||(33277509-33277570)
chr3 (226-259)||(44699826-44699859)
chr3 (224-273)||(48649177-48649226)
chr3 (224-268)||(46149634-46149678)
chr3 (224-268)||(51469283-51469327)
[»] chr2 (36 HSPs)
chr2 (197-289)||(1296363-1296455)
chr2 (183-280)||(22560530-22560627)
chr2 (220-289)||(36237615-36237684)
chr2 (197-275)||(9276306-9276384)
chr2 (220-289)||(11750241-11750310)
chr2 (220-268)||(1297122-1297170)
chr2 (220-268)||(9275591-9275639)
chr2 (220-268)||(29719451-29719499)
chr2 (220-289)||(24933820-24933889)
chr2 (225-270)||(40252025-40252070)
chr2 (220-289)||(42182614-42182683)
chr2 (211-275)||(29512369-29512433)
chr2 (217-288)||(23343764-23343835)
chr2 (222-289)||(24754995-24755062)
chr2 (210-268)||(18174659-18174717)
chr2 (210-276)||(42459048-42459114)
chr2 (220-268)||(8669195-8669243)
chr2 (224-268)||(9540336-9540380)
chr2 (220-280)||(11007224-11007284)
chr2 (220-268)||(12725614-12725662)
chr2 (224-268)||(15902885-15902929)
chr2 (225-289)||(18821235-18821299)
chr2 (224-268)||(22301873-22301917)
chr2 (220-288)||(23856620-23856688)
chr2 (224-268)||(29513150-29513194)
chr2 (220-259)||(8542547-8542586)
chr2 (224-259)||(16692977-16693012)
chr2 (221-268)||(29559420-29559467)
chr2 (210-268)||(18174104-18174162)
chr2 (226-268)||(27177917-27177959)
chr2 (222-275)||(24121291-24121344)
chr2 (220-268)||(15774207-15774255)
chr2 (211-275)||(19918712-19918776)
chr2 (224-268)||(26752726-26752770)
chr2 (225-273)||(34812860-34812908)
chr2 (220-264)||(38361076-38361120)
[»] chr8 (26 HSPs)
chr8 (167-268)||(3291483-3291581)
chr8 (210-275)||(26654367-26654432)
chr8 (222-275)||(41974638-41974691)
chr8 (220-268)||(38576301-38576349)
chr8 (210-280)||(22320367-22320437)
chr8 (188-290)||(37064799-37064900)
chr8 (227-289)||(37732810-37732872)
chr8 (224-280)||(31641504-31641560)
chr8 (224-275)||(3165125-3165176)
chr8 (226-276)||(8373698-8373748)
chr8 (214-268)||(31602021-31602075)
chr8 (211-255)||(8298265-8298309)
chr8 (199-275)||(31642065-31642141)
chr8 (224-268)||(32414527-32414571)
chr8 (220-275)||(8996973-8997028)
chr8 (225-280)||(32979828-32979883)
chr8 (226-268)||(8372918-8372960)
chr8 (225-267)||(9197101-9197143)
chr8 (224-258)||(11686241-11686275)
chr8 (225-287)||(17725658-17725720)
chr8 (225-275)||(26652291-26652341)
chr8 (195-265)||(38628258-38628328)
chr8 (220-289)||(37024990-37025058)
chr8 (208-268)||(45907-45967)
chr8 (224-268)||(27441471-27441515)
chr8 (224-268)||(28929850-28929894)
[»] chr1 (40 HSPs)
chr1 (195-276)||(13263491-13263572)
chr1 (224-289)||(25469090-25469155)
chr1 (220-288)||(30663342-30663410)
chr1 (213-264)||(46812180-46812231)
chr1 (220-289)||(34308456-34308525)
chr1 (220-288)||(30932795-30932863)
chr1 (220-268)||(34309230-34309278)
chr1 (221-268)||(4433848-4433895)
chr1 (220-275)||(30663976-30664031)
chr1 (222-268)||(49680815-49680861)
chr1 (220-289)||(8988548-8988617)
chr1 (212-289)||(28181516-28181593)
chr1 (226-275)||(37853141-37853190)
chr1 (207-275)||(7406242-7406310)
chr1 (220-268)||(10121552-10121600)
chr1 (220-268)||(13262837-13262885)
chr1 (199-275)||(25468507-25468583)
chr1 (221-268)||(4439207-4439254)
chr1 (220-275)||(8987787-8987842)
chr1 (210-289)||(36389758-36389837)
chr1 (222-268)||(7559201-7559247)
chr1 (225-275)||(19172580-19172630)
chr1 (210-268)||(28182062-28182120)
chr1 (226-287)||(45818006-45818067)
chr1 (220-268)||(168894-168942)
chr1 (225-289)||(19171761-19171825)
chr1 (220-268)||(27256712-27256760)
chr1 (224-268)||(47967866-47967910)
chr1 (222-289)||(7558432-7558499)
chr1 (225-268)||(10120787-10120830)
chr1 (221-268)||(11548804-11548851)
chr1 (226-289)||(17171914-17171977)
chr1 (225-268)||(17172667-17172710)
chr1 (225-268)||(24991974-24992017)
chr1 (214-257)||(32038492-32038535)
chr1 (222-268)||(11704810-11704856)
chr1 (234-268)||(46391880-46391914)
chr1 (210-255)||(23026600-23026645)
chr1 (220-289)||(49681673-49681742)
chr1 (220-268)||(169627-169675)
[»] scaffold0176 (1 HSPs)
scaffold0176 (220-275)||(26589-26644)
[»] scaffold0085 (4 HSPs)
scaffold0085 (226-289)||(22076-22139)
scaffold0085 (220-275)||(15020-15075)
scaffold0085 (220-259)||(15858-15897)
scaffold0085 (220-274)||(15080-15134)
[»] scaffold0093 (1 HSPs)
scaffold0093 (220-280)||(23728-23788)
[»] scaffold0002 (1 HSPs)
scaffold0002 (220-287)||(428901-428968)
[»] scaffold2007 (1 HSPs)
scaffold2007 (221-275)||(748-802)
[»] scaffold0504 (1 HSPs)
scaffold0504 (226-275)||(5385-5434)
[»] scaffold0096 (1 HSPs)
scaffold0096 (226-267)||(39901-39942)
[»] scaffold1213 (1 HSPs)
scaffold1213 (219-275)||(1893-1949)
[»] scaffold0418 (1 HSPs)
scaffold0418 (222-275)||(6886-6939)
[»] scaffold1207 (1 HSPs)
scaffold1207 (220-268)||(1591-1639)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 38056362 - 38055945
Alignment:
Q  12 aagaatattgaagaattagcatggaaagaatattgaagagtggatgtggctgagaattacaaagtttcgacgaactaatggcttgaagattcgttcaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38056362 aagaatattgaagaattagcatggaaagaatattgaagagtggatgtggctgagaattacaaagtttcgacaaactaatggcttgaagattcgttcaaat 38056263  T
Q  112 taagcttttagtgaatatgtgatcaaaatcaagtataatcgcgcagtgaaaacaaatgtgagttgatttagtaaacaattataagcttttgattttaaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||    
T  38056262 taagcttttagtgaatatgtgatcaaaatcaagtataatcgcgcagtgaaaacagatgtgagttgatttagtaaacaattataagcctttgatttttaaa 38056163  T
Q  212 aatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatataaagatcaattaatttgaaatnn 311  Q
    ||||||| |||||||||||||||||||||||||||||||||     ||||| |||||||||    || ||||||||||||||||||||||||||||||      
T  38056162 aatagacggttgagatttggtatcaacgaatccgttgacac-----gttaatggatcatga----ctatatatatataaagatcaattaatttgaaat-a 38056073  T
Q  312 nnnnnntcaattgatttttgttattttgttcaatagaaacaaatttagatgaatgtaat-agagaaaattaagcaaaacgtacctcaaaaactagtatag 410  Q
          |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  38056072 aaaaaatcaattga-ttttgttattttgttcaataaaaacaaatttagatgaatgtaatcagagaaaattaagcaaaacatacctc-aaaactagtatag 38055975  T
Q  411 tgagatgattacctaaattcttctgacaac 440  Q
    ||||||||||||||||||||||||||||||    
T  38055974 tgagatgattacctaaattcttctgacaac 38055945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 29046081 - 29046012
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||    
T  29046081 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatatata 29046012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 6476790 - 6476850
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||    
T  6476790 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctctctct 6476850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 234747 - 234686
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatata 287  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  234747 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatata 234686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 235653 - 235596
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||    
T  235653 aaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 235596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 4084932 - 4084863
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||| | ||||||||||    
T  4084932 gttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacggatcctgactctatatatatatata 4084863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 19128832 - 19128767
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||| || ||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  19128832 aaaataaacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 19128767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 29087975 - 29087911
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatat 286  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||| | |||||||    
T  29087975 tgagatttggtgtcaatgaatccgttgacacctggtgtcaacggatcctgactctatatatatat 29087911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 14478983 - 14478904
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||||| || | ||||||| |||||||||||||||||||||| ||| |||||||| ||||| | | ||||||||||    
T  14478983 aaaatagacaattaaaatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctgactatatatatatatata 14478904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 28705878 - 28705933
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||| ||||||    
T  28705878 gttgagatttagtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 28705933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 236919 - 236976
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||||| || |||||    
T  236919 aaatagacggttgagatttggtgtctacgaatccgttgacacctggtgtcaatggatc 236976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 237826 - 237875
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  237826 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 237875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 1554086 - 1554151
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||| |  |||||| ||||||||||    
T  1554086 agatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctctctatatatatata 1554151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 19359750 - 19359701
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  19359750 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 19359701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 7632143 - 7632099
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  7632143 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 7632099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 10554599 - 10554555
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  10554599 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacg 10554555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 27364486 - 27364534
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  27364486 gttgagatttggtgtcaacgaatccattgacacctggtgtcaacggatc 27364534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 17071783 - 17071862
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||| || |||| |||||||| ||||||||| |||| ||||||||||| |||||||| | ||||| | ||||||||||    
T  17071783 aaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactctatatatatatata 17071862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 28705217 - 28705170
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    ||||||||||||| | |||||||||||||||||||||||| |||||||    
T  28705217 gttgagatttggtgtaaacgaatccgttgacacctggtgtcaacggat 28705170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 43510278 - 43510215
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| | |||||||| ||||||||||||||| |||||||| | ||||| ||||||||||||    
T  43510278 atttggtgttaacgaatctgttgacacctggtgtcaacggatcctaactctatctatatatata 43510215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 17071286 - 17071228
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || ||||||||||||| ||||||||| |||||||||||| ||| ||||||||    
T  17071286 aaaataaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatc 17071228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 34600323 - 34600265
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || ||||||||||||| ||||||||| |||||||||||| ||| ||||||||    
T  34600323 aaaataaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatc 34600265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 19360481 - 19360530
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||| ||||||||| |||||||||||||||| |||||||| ||||||    
T  19360481 atttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactc 19360530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 20854897 - 20854954
Alignment:
Q  213 atagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcat 270  Q
    |||||| ||| ||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  20854897 atagacggttcagatttggtgtcaacgaatccattaacacctggtgtcaacggatcat 20854954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 1281884 - 1281840
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  1281884 agatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 1281840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 1283503 - 1283543
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  1283503 agatttggtgtcaacgaatccgttgacacctggtgtcaacg 1283543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 1283533 - 1283572
Alignment:
Q  229 tggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1283533 tggtgtcaacgaatccgttgacacctggtgtcaacggatc 1283572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 10554565 - 10554526
Alignment:
Q  229 tggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  10554565 tggtgtcaacgaatccgttgacacctggtgtcaacggatc 10554526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 25858257 - 25858214
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||    
T  25858257 gatttggtgtcaacgaatccgttgacacctagtgtcaacggatc 25858214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 22799756 - 22799806
Alignment:
Q  217 acagttgagatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    |||||| ||||||||| ||||||||| | |||||||||||||| |||||||    
T  22799756 acagttaagatttggtgtcaacgaattcattgacacctggtgtcaacggat 22799806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 27363779 - 27363813
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgtt 260  Q
    ||||||| |||||||||||||||||||||||||||    
T  27363779 atttggtgtcaacgaatccgttgacacctggtgtt 27363813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 34600820 - 34600890
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    |||||| || |||| |||||||| ||||||||| |||| ||||||||||| || ||||| | |||||||||    
T  34600820 aaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaagggatcctaactctctct 34600890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 34709038 - 34709084
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  34709038 tgagatttggtgccaacgaatccgttgacacctggtgtcaacagatc 34709084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 36038745 - 36038699
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| | |||||||||||||| ||||||||| ||||||||    
T  36038745 tgagatttggtgttaacgaatccgttgatacctggtgtcaacggatc 36038699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 22798949 - 22798905
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||| | | ||||||||    
T  22798949 agatttggtgtcaacgaatccgttgacacctgatatcaacggatc 22798905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 33005569 - 33005517
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    |||||| || ||||||||| | ||||||| |||||| ||||||||||||||||    
T  33005569 agattttgtgtcaacgaattcattgacacttggtgtcaacggatcatgactct 33005517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 38056846 - 38056798
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||| ||||||| ||||| |||||||||||||||||||| ||| ||||    
T  38056846 gttgaaatttggtgtcaaccaatccgttgacacctggtgtcaacagatc 38056798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 38057599 - 38057663
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| ||||| ||||||||||||||| |||| |||||||| | | ||| | ||||||||||    
T  38057599 gatttggtgtcaaccaatccgttgacacctagtgtcaacggatcctaattctatatatatatata 38057663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 4940042 - 4940273
Alignment:
Q  12 aagaatattgaagaattagcatggaaagaatattgaagagtggatgtggctgagaattacaaagtttcgacgaactaatggcttgaagattcgttcaaat 111  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4940042 aagaatattgaagaattagcatagaaagaatattaaagagtggatgtggctgagaattacaaagtt-cgacgaactaatggcctgaagattcgttcaaat 4940140  T
Q  112 taagcttttagtgaatatgtgatcaaaatcaagtataatcgcgcagtgaaaacaaatgtgagttgatttagtaaacaattataagcttttgattttaaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  4940141 taagcttttagtgaatatgtgatcaaaatcaagtataatcgcgcagtgaaaacagatgtgagttgatttagtaaacaattataagcctttgattttaaaa 4940240  T
Q  212 aatagacagttgagatttggtatcaacgaatcc 244  Q
    ||||||| |||||||| |||| |||||| ||||    
T  4940241 aatagacggttgagatatggtgtcaacggatcc 4940273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 11434392 - 11434524
Alignment:
Q  156 agtgaaaacaaatgtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctg 255  Q
    |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||  ||    
T  11434392 agtgaaaacagatgtgagttgatttcgtaaacaattataagcctttgattttaaaaaatagaaggttgagatttggtgtcaacgaatccgttgacatttg 11434491  T
Q  256 gtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||  ||||||| | ||||||||||    
T  11434492 gtgttaacggatactgactct-tatatatatata 11434524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 26529503 - 26529581
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||    
T  26529503 aaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatatata 26529581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 10171337 - 10171273
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  10171337 aaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 10171273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 10171953 - 10172034
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||| |||| ||||||||||||| ||||||||| |||||||||||||||| |||||||| | ||||| | ||||||||||    
T  10171953 aaaaaagagacggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactctatatatatatata 10172034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 12344956 - 12344898
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| || |||||    
T  12344956 aaaatagacggttgagatttggtatcaacgaatctgttgacacctggtgtcaatggatc 12344898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 26528887 - 26528827
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  26528887 aaaaaagagacggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatc 26528827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 19311056 - 19310998
Alignment:
Q  217 acagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||    
T  19311056 acagttgagatttggtgtcaacaaatccgttaacacctggtgtcaacggatcctgactc 19310998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 33436277 - 33436342
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||| ||||| | | ||||||||||    
T  33436277 agatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactatatatatatatata 33436342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 8488521 - 8488473
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||    
T  8488521 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 8488473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 19323033 - 19322965
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaac-ggatcatgactctctctatatatata 289  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||| | ||||||||| | ||||||    
T  19323033 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacgggatcctaactctctctttctatata 19322965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 19323766 - 19323814
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  19323766 gttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 19323814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 9441287 - 9441229
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||||||| |||||| ||||||||||||||||||| |||| ||| || ||||||||    
T  9441287 tgagatttggtgtcaacggatccgttgacacctggtgtcaacgaatcctgtctctctct 9441229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 19311830 - 19311880
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgact 274  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||| |||||    
T  19311830 agatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcctgact 19311880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 18227783 - 18227729
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||||||| ||||||    
T  18227783 gttgtgatttggtgtcaacgaatccgttgaca-ctggtgtcaacggatcctgactc 18227729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 33435395 - 33435344
Alignment:
Q  217 acagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  33435395 acagttaagatttggtgtcaacgaatccgttaacaccaggtgtcaacggatc 33435344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 3623237 - 3623179
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || ||||||||||||| |||| |||| |||||||||||| ||| ||||||||    
T  3623237 aaaataaacggttgagatttggtgtcaaagaattcgttgacacctgatgtcaacggatc 3623179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 8489284 - 8489334
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| | ||||||| |||||||||||||||| |||||||| ||||||    
T  8489284 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcctgactc 8489334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 5861938 - 5861894
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||||||| |||||||||| |||| |||||||||| ||||    
T  5861938 gttgagatttggtgtcaacgaatctgttggcacctggtgtcaacg 5861894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 3772476 - 3772574
Alignment:
Q  170 tgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  3772476 tgagttgatttcgtaaacaattattagcctttgattttaaaaaatagacggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacggatc 3772574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 45931164 - 45931282
Alignment:
Q  167 atgtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacgga 266  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||| |||  |||||||||||| |||||| |||||||||||  |||||||||||||    
T  45931164 atgtgagttgatttagtaaataattataagcttttgatttataaaaatggacgattgagatttggtgtcaacggatccgttgacatatggtgttaacgga 45931263  T
Q  267 tcatgactctctctatata 285  Q
    || | ||||| | ||||||    
T  45931264 tcctaactctatatatata 45931282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 26636155 - 26636086
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  26636155 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctctctctatatata 26636086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 37949693 - 37949588
Alignment:
Q  184 aaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctata 283  Q
    |||| ||||||||| |||||||  | |||||  || ||||||||||||| |||||||||||||||||||||||||| |||||||| || |||| | ||||    
T  37949693 aaactattataagcctttgattaaataaaatcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctctatatata 37949594  T
Q  284 tatata 289  Q
    ||||||    
T  37949593 tatata 37949588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 7668534 - 7668464
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatataa 290  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| | | |||||||||||    
T  7668534 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactatatatatatatataa 7668464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 25342549 - 25342481
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatat 288  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||| | |||||||||    
T  25342549 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatatat 25342481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 30661419 - 30661503
Alignment:
Q  184 aaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| ||||||||| |||||||  | |||||  || ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  30661419 aaactattataagcctttgattaaataaaatcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 30661503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 30660643 - 30660576
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| | ||||| | ||||||||||    
T  30660643 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatatata 30660576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 46428239 - 46428184
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  46428239 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 46428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 25599073 - 25599019
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  25599073 ttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 25599019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 25343355 - 25343307
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  25343355 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 25343307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 18977720 - 18977838
Alignment:
Q  170 tgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatca 269  Q
    |||||| |||||  ||||||||| || |||| ||||  ||||||| ||  ||||||||||||| | |||||||||||||||||||||||| || |||||     
T  18977720 tgagttaatttaagaaacaattacaacctttggatta-aaaaaattgatggttgagatttggtgttaacgaatccgttgacacctggtgtcaatggatcc 18977818  T
Q  270 tgactctctctatatatata 289  Q
    ||||| | | ||||||||||    
T  18977819 tgactatatatatatatata 18977838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 25343216 - 25343295
Alignment:
Q  197 cttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    |||||||||  ||||||| ||  ||||||||||||| ||||||||| | |||||||||||||| |||||||| |||||||    
T  25343216 cttttgattaaaaaaaattgatggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctgactct 25343295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 46428819 - 46428886
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| | ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||||||    
T  46428819 tgagatttgatgtcaacgaattcgttgacacctggtgtcaacggatcctgactctatatatatatata 46428886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 26636860 - 26636914
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgact 274  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||    
T  26636860 gttgagatttggtgtcaacgaatccgttgacaccttgtgtcaacggatcctgact 26636914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 37950469 - 37950515
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  37950469 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 37950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 45099899 - 45099948
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  45099899 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 45099948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 13785597 - 13785641
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  13785597 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 13785641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 19067689 - 19067641
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  19067689 gttgagatttggtgtcaacgaatccgttgacacgtggtgtcaacggatc 19067641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 24389616 - 24389664
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  24389616 gttgagatttggtgtcaatgaatccgttgacacctggtgtcaacggatc 24389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 27948498 - 27948450
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  27948498 gttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 27948450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 43065120 - 43065164
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  43065120 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 43065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 45162024 - 45161973
Alignment:
Q  217 acagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||||||| |||||||||||||| ||||||||||| || |||||    
T  45162024 acagttgagatttggtgtcaacgaatccgttaacacctggtgtcaatggatc 45161973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 3028026 - 3027984
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaa 262  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  3028026 gttgagatttggtgtcaacgaattcgttgacacctggtgttaa 3027984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 3903340 - 3903393
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgact 274  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||||| |||||    
T  3903340 ttgatatttggtgtcaacggatccgttgacacctggtgtcaacggatcctgact 3903393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 21496983 - 21497052
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| ||||||||| |||||||||||| ||| |||||||| ||| | | | ||||||||||    
T  21496983 gttgagatttggtgtcaacgaattcgttgacacctgttgtcaacggatcctgattatatatatatatata 21497052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 37706480 - 37706411
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||| ||||||| | |||||||||||||| ||||||||| || ||||| ||||||| | ||||||||||    
T  37706480 gttgaaatttggtgttaacgaatccgttgatacctggtgtcaatggatcctgactctatatatatatata 37706411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 40273612 - 40273555
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctc 277  Q
    ||||||||||||| ||||||||| | |||||||||||||| |||||||| | ||||||    
T  40273612 gttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctaactctc 40273555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 1417656 - 1417612
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||    
T  1417656 agatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 1417612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 3029198 - 3029246
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||| ||||||||| |||||||||||||||| ||||||||    
T  3029198 gttgggatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 3029246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 16664125 - 16664173
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||    
T  16664125 gttgagatttagtgtcaacggatccgttgacacctggtgtcaacggatc 16664173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 17638485 - 17638533
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||    
T  17638485 gttgagatttagtgtcaacggatccgttgacacctggtgtcaacggatc 17638533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 19068395 - 19068443
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||| ||||||| ||||||||| |||||||||||||||| ||||||||    
T  19068395 gttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatc 19068443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 38225979 - 38226023
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||    
T  38225979 agatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 38226023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 47719708 - 47719752
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  47719708 agatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 47719752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 24719386 - 24719339
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| ||||||| |||||||||||||||||| ||||||| ||||||||    
T  24719386 ttgatatttggtgtcaacgaatccgttgacatctggtgtcaacggatc 24719339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 31278159 - 31278202
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  31278159 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatc 31278202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 3219536 - 3219594
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || |||||||||| || ||||||||| |||| |||||| |||||||||||||    
T  3219536 aaaataaacggttgagattttgtgtcaacgaattcgttaacacctagtgttaacggatc 3219594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 14686181 - 14686135
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| ||||| ||||||||||||| |||||| ||||||||    
T  14686181 tgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatc 14686135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 37395505 - 37395547
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| | |||||||||||||||||||||||| ||||||||    
T  37395505 atttggtgttaacgaatccgttgacacctggtgtcaacggatc 37395547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 38225347 - 38225297
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| | |||| || |||||||||||||||| |||||||||||||||    
T  38225347 gatttggtgttaacggattcgttgacacctggtgtcaacggatcatgactc 38225297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 25599821 - 25599874
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| |||| |||||  |||||||||||||| |||||||| ||||||    
T  25599821 tgagatttggtgtcaatgaatctattgacacctggtgtcaacggatcctgactc 25599874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 3688432 - 3688388
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||||    
T  3688432 agatttggtgtcaacgaatccgttgatatctggtgtcaacggatc 3688388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 14305138 - 14305094
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  14305138 agatttggtgtcaatgaatccgttgacacctagtgtcaacggatc 14305094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 24453730 - 24453770
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||| ||||| |||||||||||||||||||| ||||    
T  24453730 agatttggtgtcaacaaatccgttgacacctggtgtcaacg 24453770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 31277469 - 31277433
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaa 262  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  31277469 atttggtgtcaacgaattcgttgacacctggtgttaa 31277433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 45099185 - 45099121
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| | ||||||| |||||||||||| ||| |||||||| ||||| | | ||||||||||    
T  45099185 gatttggtgttaacgaattcgttgacacctgatgtcaacggatcctgactatatatatatatata 45099121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 8238 - 8339
Alignment:
Q  167 atgtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacgga 266  Q
    ||||||||||||||  ||||||||||| ||| |||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||| || |||    
T  8238 atgtgagttgatttcataaacaattattagcctttgattttaaaaaatagacggttgagatttggtgttaacgaatacgttgacacctggtgtcaatgga 8337  T
Q  267 tc 268  Q
    ||    
T  8338 tc 8339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 53148559 - 53148666
Alignment:
Q  167 atgtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacgga 266  Q
    ||||||||| ||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||| ||| || |||    
T  53148559 atgtgagttaatttagtaagcaattataagcctttgattt-aaaaaatagacggttgagatttggtgtcaacgaatctgttgacacctgatgtcaatgga 53148657  T
Q  267 tcatgactc 275  Q
    || ||||||    
T  53148658 tcctgactc 53148666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 47688469 - 47688548
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||| | ||||||||||    
T  47688469 aaaataaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatatata 47688548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 30573688 - 30573778
Alignment:
Q  199 tttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||  ||| ||| ||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||| | ||||||||||    
T  30573688 tttgattaaaaacaatcgacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactctatatatatatata 30573778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 47785799 - 47785859
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  47785799 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacagatcctgactctctct 47785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 8247759 - 8247680
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| ||| |||||| || |||||||||||||||||||| ||||| |||||||| ||||||| ||| ||||||||    
T  8247759 aaaatagacggttaagattttgtgtcaacgaatccgttgacaccaggtgtcaacggatcctgactctgtctctatatata 8247680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 53732498 - 53732440
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||    
T  53732498 aaaatagacggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacggatc 53732440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 8248510 - 8248575
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||| ||| ||||||||| |||||||||||||||||| ||||||| |||||||| ||||||    
T  8248510 aaaatagacggttaagatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactc 8248575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 8266175 - 8266240
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||| ||| ||||||||| |||||||||||||||||| ||||||| |||||||| ||||||    
T  8266175 aaaatagacggttaagatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactc 8266240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 9365222 - 9365166
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||    
T  9365222 gttgagatttggtgtcaacaaattcgttgacacctggtgttaacggatcctgactct 9365166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 20774180 - 20774235
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||    
T  20774180 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactc 20774235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 53772854 - 53772791
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| |||||||||||||||||||||||||| |||||||| | ||||| | ||||||||||    
T  53772854 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatatata 53772791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 2444419 - 2444365
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||| |||||||||||||||||||||||||| |||||||| | |||||||||    
T  2444419 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctctct 2444365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 7841880 - 7841811
Alignment:
Q  184 aaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacc 253  Q
    |||||||||||  |||| ||||| | |||||||| |||||||||||||| ||||||||| ||||||||||    
T  7841880 aaacaattatagtctttggatttaataaaatagatagttgagatttggtgtcaacgaattcgttgacacc 7841811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 16903643 - 16903687
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  16903643 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacg 16903687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 24374842 - 24374786
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||||| |||||||    
T  24374842 gttgagatttggtgtcaacgaattcgttgacagctggtgtcaacggatcctgactct 24374786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 26147032 - 26147080
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  26147032 gttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 26147080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 32089601 - 32089661
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| | || |||||||||||||||||| |||||||| ||||||| ||||||||    
T  32089601 aaaaaatagacggatgtgatttggtatcaacgaattcgttgacatctggtgtcaacggatc 32089661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 44469540 - 44469476
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| ||||||||| |||||||||||||||| | |||||||||||| | | ||||||||||    
T  44469540 gatttggtgtcaacgaattcgttgacacctggtgtcatcggatcatgactatatatatatatata 44469476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 56262543 - 56262483
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||| ||||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  56262543 aaaatatagacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatc 56262483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 599302 - 599349
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  599302 ttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatc 599349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 40348143 - 40348194
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatg 271  Q
    ||||||||||||||| ||||||| | |||||||||||||| |||||||||||    
T  40348143 gttgagatttggtattaacgaattcattgacacctggtgtcaacggatcatg 40348194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 52871346 - 52871303
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  52871346 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 52871303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 55976215 - 55976172
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  55976215 agatttggtgtcaacgaatccgttgacacctggtgtcaacggat 55976172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 8265424 - 8265366
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||| |||||| || |||||||||||||||||||| ||||| ||||||||    
T  8265424 aaaatagacggttaagattttgtgtcaacgaatccgttgacaccaggtgtcaacggatc 8265366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 9365804 - 9365862
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacgga 266  Q
    ||||||| ||| |||| |||||||| |||| ||||||||||||||||||||| ||||||    
T  9365804 aaaaaattgacggttgtgatttggtgtcaatgaatccgttgacacctggtgtcaacgga 9365862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 31329722 - 31329772
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| | |||||||||||||||||||||||| |||||||| ||||||    
T  31329722 gatttggtgttaacgaatccgttgacacctggtgtcaacggatcctgactc 31329772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 53733179 - 53733125
Alignment:
Q  213 atagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    |||||| ||||||||||||||||||||||| |||| ||| ||||||| |||||||    
T  53733179 atagacggttgagatttggtatcaacgaattcgttaacagctggtgtcaacggat 53733125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 55001430 - 55001488
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || ||| |||||| || |||||||||||||||||||||||||| ||||||||    
T  55001430 aaaataaacggttaagatttagtgtcaacgaatccgttgacacctggtgtcaacggatc 55001488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 5046047 - 5046002
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctg 255  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||    
T  5046047 aaaataaacggttgagatttggtgtcaacgaatccgttgacacctg 5046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 7841595 - 7841542
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||||||| ||||||    
T  7841595 tgagatttggtgtcaacgaatccgttaacacctgatgtcaacggatcctgactc 7841542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 11938764 - 11938716
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||| ||||    
T  11938764 gttgagatttggtgtcaacgaattcgttgacacctggtgtgaacagatc 11938716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 19080438 - 19080390
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||| ||||    
T  19080438 gttgaaatttggtgtcaacgaatccgttgacacctggtgtcaacagatc 19080390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 53733722 - 53733770
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgt 259  Q
    |||||||  ||||| ||||||| ||||||||||||||||||||||||||    
T  53733722 aaatagatggttgaaatttggtgtcaacgaatccgttgacacctggtgt 53733770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 53773590 - 53773634
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  53773590 agatttggtgtcaacgaatccgttgacacctgatgtcaacggatc 53773634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 3654520 - 3654563
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| ||||||||||||||||||||||| || ||||||||    
T  3654520 gatttggtgtcaacgaatccgttgacacctggcgtcaacggatc 3654563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 24158824 - 24158875
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||| |||||||||| ||||||||||||||| || ||||| ||||||    
T  24158824 agatttggtgtcaacgaatctgttgacacctggtgtcaatggatcctgactc 24158875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 42882686 - 42882729
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  42882686 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatc 42882729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 55976959 - 55976994
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||||| ||||||||||||||||||||||||||    
T  55976959 agatttggtgtcaacgaatccgttgacacctggtgt 55976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 2446163 - 2446209
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| | |||||||| ||||||||||||||| ||||||||    
T  2446163 tgagatttggtgttaacgaatctgttgacacctggtgtcaacggatc 2446209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 16903677 - 16903723
Alignment:
Q  229 tggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||| |||||||||||||||||||||||||| |||| ||| ||||||    
T  16903677 tggtgtcaacgaatccgttgacacctggtgtcaacgaatcctgactc 16903723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 19550333 - 19550291
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| |||||||||||||||||||||||||| || |||||    
T  19550333 atttggtgtcaacgaatccgttgacacctggtgtcaagggatc 19550291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 43146650 - 43146692
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||    
T  43146650 tgagatttggtgtcaaggaatccgttgacacctggtgtcaacg 43146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 44791772 - 44791706
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatataaa 291  Q
    |||||||| | ||||||| |||||||||||||||  || ||||| ||||||| | ||||||||||||    
T  44791772 gatttggtgttaacgaattcgttgacacctggtgccaatggatcctgactctttatatatatataaa 44791706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 47687972 - 47687914
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || |||| |||||||| ||||||||| |||| ||||||||||| ||||||||    
T  47687972 aaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatc 47687914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 56263022 - 56263111
Alignment:
Q  169 gtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgt 259  Q
    |||||| ||||||  |||||||||| | |||| ||||  |||| |||||| ||||||||||||| | |||| || ||||||||||||||||    
T  56263022 gtgagtagatttaacaaacaattatgaactttggatta-aaaatatagacggttgagatttggtgtaaacggattcgttgacacctggtgt 56263111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 7842520 - 7842577
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||  ||||||||||||| ||||||||| |||||||||||| ||| || |||||    
T  7842520 aaatagatggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggatc 7842577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 11939441 - 11939510
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||||| || |||||||||||||||||||  ||||| |||||||| | ||| | | ||||||||||    
T  11939441 gttgagatttcgtgtcaacgaatccgttgacactaggtgtcaacggatcctaactatatatatatatata 11939510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 40495146 - 40495093
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||| |||||| |||||||||  ||||||||||||||| |||||||| ||||||    
T  40495146 tgaggtttggtgtcaacgaatttgttgacacctggtgtcaacggatcctgactc 40495093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 53147924 - 53147855
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||| |||||||| |||||||||||||||||| ||||||| || ||||| ||| | | | ||||||||||    
T  53147924 gttgggatttggtgtcaacgaatccgttgacatctggtgtcaatggatcctgattatatatatatatata 53147855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 1465373 - 1465317
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    |||| |||||| | |||| ||||| ||||||||||||||| |||||||| |||||||    
T  1465373 gttgtgatttgatgtcaatgaatctgttgacacctggtgtcaacggatcctgactct 1465317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 1866396 - 1866348
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||| | ||||||||| |||| ||||||||    
T  1866396 gttgagatttggtgtcaacgaattcattgacacctagtgtcaacggatc 1866348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 24551927 - 24551971
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||| |||||||||||||||||||| || |||||    
T  24551927 agatttggtgtcaacaaatccgttgacacctggtgtcaatggatc 24551971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 26159621 - 26159669
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||| ||||||||||||||||||| || ||| ||||||||    
T  26159621 gttgcgatttggtgtcaacgaatccgttgacacttgatgtcaacggatc 26159669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 32088867 - 32088835
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggt 257  Q
    |||||||| ||||||||||||||||||||||||    
T  32088867 gatttggtgtcaacgaatccgttgacacctggt 32088835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 55000736 - 55000692
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||| ||||||| || |||||    
T  55000736 agatttggtgtcaacgaatccgttgacatctggtgtcaatggatc 55000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 44699965 - 44699881
Alignment:
Q  169 gtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacc 253  Q
    |||||||||||||||||| ||||||||||  |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  44699965 gtgagttgatttagtaaataattataagccattgatttttaaaaatagacggttgagatttggtgtcaacgaatccgttgacacc 44699881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 52266441 - 52266508
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||    
T  52266441 aaaaaatagacggttgagatttggtgtcaacgaattcgttaacacctggtgttaacggatcctgactc 52266508  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 265099 - 265152
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgact 274  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  265099 ttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcatgact 265152  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 41458086 - 41458017
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||||||||||||||||||||||| | |||| ||| ||||||| | ||||||||||    
T  41458086 gttgagatttggtgtcaacgaatccgttgacacctggtatcaacgaatcctgactctatatatatatata 41458017  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 46150729 - 46150798
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||| | | ||||||||    
T  46150729 gttgagatttggtgtcaacgaatccgttgacacctagtgtcaacggatcctgactctatatttatatata 46150798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 48507020 - 48507092
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    |||| |||||| ||||||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||||    
T  48507020 aaaatatagacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctgtctctctct 48507092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 31114994 - 31114928
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||| ||||| | | ||||||||||    
T  31114994 gttgagatttggtatcaacgaatccgttgacac---gtgttaacggatcctgactatatatatatatata 31114928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 31974715 - 31974656
Alignment:
Q  209 aaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||  ||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  31974715 aaaaatagatggttgagatttggtgtcaacgaatccgttgacacttggtgtcaacggatc 31974656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 48413407 - 48413333
Alignment:
Q  184 aaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgt 259  Q
    |||||||||| ||| |||||||  ||||||| ||| |||| |||||||| ||||||||||||||||||||||||||    
T  48413407 aaacaattattagcctttgattg-aaaaaattgacggttgtgatttggtgtcaacgaatccgttgacacctggtgt 48413333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 48648252 - 48648201
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  48648252 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 48648201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 55373712 - 55373775
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| |||||||||||||||||||||||||| |||| ||| ||||||| | ||||||||||    
T  55373712 atttggtgtcaacgaatccgttgacacctggtgtcaacgaatcctgactctatatatatatata 55373775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 14871204 - 14871150
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  14871204 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactct 14871150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 17605768 - 17605715
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||    
T  17605768 aaatagacggttgaaatttggtgtcaacgaatccgttgacacctggtgtcaacg 17605715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 17603217 - 17603173
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  17603217 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 17603173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 20213536 - 20213600
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| ||||||||| ||| |||||||||||| |||||||| ||||||| | ||||||||||    
T  20213536 gatttggtgtcaacgaattcgtcgacacctggtgtcaacggatcctgactctatatatatatata 20213600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 21727533 - 21727577
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  21727533 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 21727577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 981720 - 981673
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  981720 gttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggat 981673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 45081403 - 45081458
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| |||||||||||||||||||  ||||| |||||||| ||||||    
T  45081403 gttgagatttggtgtcaacgaatccgttgacactaggtgtcaacggatcctgactc 45081458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 52281819 - 52281752
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatata 287  Q
    |||||||| |||| |||||||||||||||||||| ||| | |||||||  ||||||||| ||||||||    
T  52281819 gttgagatctggtgtcaacgaatccgttgacaccaggtatcaacggattctgactctctatatatata 52281752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 30222104 - 30222158
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||||||||||||||  |||||||||||||| |||| ||| |||||||||||    
T  30222104 atttggtatcaacgaatctattgacacctggtgtcaacgaatcctgactctctct 30222158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 11652341 - 11652296
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcat 270  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||    
T  11652341 gatttggtgtcaacgaatccgttgacacctgatgttaatggatcat 11652296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 37520561 - 37520614
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgac 273  Q
    ||||||||||||| ||||||||| |||||||||||||| | |||||||| ||||    
T  37520561 gttgagatttggtgtcaacgaattcgttgacacctggtatcaacggatcctgac 37520614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 37988220 - 37988273
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||||| ||||||    
T  37988220 tgagatttggtgtcaacgaattcgttgacacctggtgtcaatggatcctgactc 37988273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 48765074 - 48765139
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| ||||||||||| |||||||||||||| || ||||| ||||| | | ||||||||||    
T  48765074 agatttggtgtcaacgaatccattgacacctggtgtcaatggatcctgactatatatatatatata 48765139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 52605489 - 52605538
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| ||||| |||||||||||||||| |||||||| ||||||    
T  52605489 atttggtatcatcgaattcgttgacacctggtgtcaacggatcctgactc 52605538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 10847914 - 10847978
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| |||| ||||| |||||||||||||||||||||||| ||| | | | ||||||||||    
T  10847914 gatttggtgtcaatgaatctgttgacacctggtgttaacggatcttgattatatatatatatata 10847978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 48764551 - 48764475
Alignment:
Q  199 tttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||  ||| ||| ||| ||||||||||||| ||||||||| |||||||||||| ||| || ||||| ||||||    
T  48764551 tttgattaaaaacaatcgacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggatcctgactc 48764475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 51827498 - 51827562
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatat 288  Q
    |||||||||  ||||||||||||||||||| ||||| |||||||| ||||| | | |||||||||    
T  51827498 agatttggtgacaacgaatccgttgacaccaggtgtcaacggatcttgactatatatatatatat 51827562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 13477778 - 13477817
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  13477778 gttgagatttggtgtcaacgaattcgttgacacctggtgt 13477817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 17603965 - 17604000
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17603965 agatttggtgtcaacgaatccgttgacacctggtgt 17604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 31115600 - 31115647
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||| |||||||||| |||||||||| |||| ||||||||    
T  31115600 ttgagatttggtgtcaacgaatctgttgacacctagtgtcaacggatc 31115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 40872814 - 40872877
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| | ||| | | ||||||||||    
T  40872814 atttggtgtcaatgaatccgttgacacctggtgtcaacggatcttaactatatatatatatata 40872877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 48506502 - 48506440
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatg 271  Q
    |||| |||||| ||||||||||||| ||||||||| ||||||||||  |||| |||||||||||    
T  48506502 aaaatatagacggttgagatttggtgtcaacgaattcgttgacacc-agtgtcaacggatcatg 48506440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 52282400 - 52282459
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    ||||||| ||| ||||  ||||||| |||| ||||||||||||||||||||| |||||||    
T  52282400 aaaaaattgacggttgtaatttggtgtcaatgaatccgttgacacctggtgtcaacggat 52282459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 13477105 - 13477055
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| |||| |||| |||||||||||||||| |||||||| ||||||    
T  13477105 gatttggtgtcaatgaattcgttgacacctggtgtcaacggatcctgactc 13477055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 20213028 - 20212986
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  20213028 gatttggtgtcaacgaattcgttgacacctggtgtcaacggat 20212986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 37987280 - 37987238
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  37987280 atttggtgtcaacgaatccattgacacctggtgtcaacggatc 37987238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 29856683 - 29856716
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacc 253  Q
    ||||||||||||| ||||||||||||||||||||    
T  29856683 gttgagatttggtgtcaacgaatccgttgacacc 29856716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 33277509 - 33277570
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatat 286  Q
    |||||||| | ||||||| |||||||||||||||| |||||||  ||||||| | |||||||    
T  33277509 gatttggtgttaacgaattcgttgacacctggtgtcaacggattctgactctatatatatat 33277570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 44699826 - 44699859
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||| ||||||||||||||||||||||||||    
T  44699826 atttggtgtcaacgaatccgttgacacctggtgt 44699859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 48649177 - 48649226
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgac 273  Q
    ||||||||| |||||||||| ||||||||||||||| || ||||| ||||    
T  48649177 agatttggtgtcaacgaatctgttgacacctggtgtcaatggatcctgac 48649226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 46149678 - 46149634
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||||||||| |||||||||||||| || |||||    
T  46149678 agatttggtgtcaacgaatccattgacacctggtgtcaatggatc 46149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 51469283 - 51469327
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||||||||||||||||| || ||| ||||||||    
T  51469283 agatttggtgtcaacgaatccgttgacacttgatgtcaacggatc 51469327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 1296455 - 1296363
Alignment:
Q  197 cttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||||  ||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||||||    
T  1296455 cttttgattaaaaaaaattgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactctatatatatatata 1296363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 22560530 - 22560627
Alignment:
Q  183 taaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||| ||| |||||||||||||  | | |||  || ||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||    
T  22560530 taaactattgtaagcttttgattaaatataatgtacggttgagatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctgactctctct 22560627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 36237684 - 36237615
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||| ||||||| |||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  36237684 gttgaaatttggtgtcaatgaatccgttgacacctggtgtcaacggatcctgactctctatatatatata 36237615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 9276306 - 9276384
Alignment:
Q  197 cttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||||  ||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| |||||||| ||||||    
T  9276306 cttttgattaaaaaaaattgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactc 9276384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 11750310 - 11750241
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||||||||||||||||||||||||| || ||||| | ||||| | ||||||||||    
T  11750310 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactctatatatatatata 11750241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 1297122 - 1297170
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  1297122 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 1297170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 9275639 - 9275591
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9275639 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 9275591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 29719499 - 29719451
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  29719499 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 29719451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 24933889 - 24933820
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||| |||| |||||||||| ||||| |||||||| || |||||| ||||||||||    
T  24933889 gttgagatttggtgtcaatgaattcgttgacaccaggtgtcaacggatcctgtctctctatatatatata 24933820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 40252070 - 40252025
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcat 270  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||    
T  40252070 gatttggtgtcaacgaatccgttgacacctggtgttaatggatcat 40252025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 42182614 - 42182683
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||| || | ||||| | ||||||||||    
T  42182614 gttgagatttggtgtcaacgaatcccttgacacctggtgtcaacgggtcctaactctatatatatatata 42182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 29512433 - 29512369
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||  |||||||||||| ||||| ||| |||||||||| ||||| |||||||||||||||    
T  29512433 aaatagactattgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcatgactc 29512369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 23343835 - 23343764
Alignment:
Q  217 acagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatat 288  Q
    |||||||||||||| | |||||||||||||||||| ||||||| ||| |||| ||||| | | |||||||||    
T  23343835 acagttgagatttgatgtcaacgaatccgttgacatctggtgtcaacagatcctgactatatatatatatat 23343764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 24754995 - 24755062
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||| ||||||||||  |||||||||||||| |||||||| ||||| | | ||||||||||    
T  24754995 tgagatttggtttcaacgaatcaattgacacctggtgtcaacggatcctgactatatatatatatata 24755062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 18174659 - 18174717
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || ||||||||||||| ||||||||| |||||||||||| ||| ||||||||    
T  18174659 aaaataaacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatc 18174717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 42459114 - 42459048
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    |||||||||  |||||||||| | |||||||||| ||||||||||||||| || ||||| |||||||    
T  42459114 aaaatagacgattgagatttgatgtcaacgaatctgttgacacctggtgtcaatggatcctgactct 42459048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 8669195 - 8669243
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||| |||||||||| ||||||||||||||||||| ||||    
T  8669195 gttgggatttggtgtcaacgaatctgttgacacctggtgttaacagatc 8669243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 9540380 - 9540336
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||    
T  9540380 agatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 9540336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 11007284 - 11007224
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    |||||||||| || |||||||||||||||||||||||||| ||| || | | |||||||||    
T  11007284 gttgagatttagtgtcaacgaatccgttgacacctggtgtcaacagagcttaactctctct 11007224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 12725614 - 12725662
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||| ||||| |||||||||||||||||||| ||||||||    
T  12725614 gttgggatttggtgtcaacaaatccgttgacacctggtgtcaacggatc 12725662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 15902885 - 15902929
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || |||||||||||||||||||||||||| ||||||||    
T  15902885 agattttgtgtcaacgaatccgttgacacctggtgtcaacggatc 15902929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 18821235 - 18821299
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| ||||  |||||||||||||||||||| || ||||| ||||||| | ||||||||||    
T  18821235 gatttggtgtcaattaatccgttgacacctggtgtcaatggatcctgactctatatatatatata 18821299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 22301873 - 22301917
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||    
T  22301873 agatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 22301917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 23856688 - 23856620
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatat 288  Q
    ||||||||||||| ||||  |||||||||||||| ||||| |||||||| | ||||| | |||||||||    
T  23856688 gttgagatttggtgtcaatcaatccgttgacaccaggtgtcaacggatcttaactctatatatatatat 23856620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 29513150 - 29513194
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  29513150 agatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 29513194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 8542547 - 8542586
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  8542547 gttgagatttggtgtcaacgaatccgttgacacctagtgt 8542586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 16692977 - 16693012
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16692977 agatttggtgtcaacgaatccgttgacacctggtgt 16693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 29559420 - 29559467
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||| ||||||||| |||||||||||||||| ||| ||||    
T  29559420 ttgagatttggtgtcaacgaattcgttgacacctggtgtcaacagatc 29559467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 18174162 - 18174104
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||| || |||| |||||||| ||||||||| |||| ||||||||||| ||||||||    
T  18174162 aaaataaacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatc 18174104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 27177959 - 27177917
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||    
T  27177959 atttggtgtcaacgaattcgttgacacctggtgtcaacggatc 27177917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 24121291 - 24121344
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| |||| ||||| ||||||||||||||| || ||||| ||||||    
T  24121291 tgagatttggtctcaatgaatctgttgacacctggtgtcaatggatcctgactc 24121344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 15774255 - 15774207
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||| ||| |||||||||| ||||| ||||||||    
T  15774255 gttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatc 15774207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 19918712 - 19918776
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||  ||||||||||| | |||||||||||||||||| | | ||| |||||||| ||||||    
T  19918712 aaatagaaggttgagatttgatgtcaacgaatccgttgacatcagatgtcaacggatcctgactc 19918776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26752726 - 26752770
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| | ||||||||| |||||||||||||||| ||||||||    
T  26752726 agatttgatgtcaacgaattcgttgacacctggtgtcaacggatc 26752770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 34812860 - 34812908
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgac 273  Q
    |||||||| | |||||||||||||||| ||||||| |||||||| ||||    
T  34812860 gatttggtgttaacgaatccgttgacaactggtgtcaacggatcctgac 34812908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 38361120 - 38361076
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    ||||||||||||| ||||||||| |||||||||||| ||| ||||    
T  38361120 gttgagatttggtgtcaacgaattcgttgacacctgatgtcaacg 38361076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 3291483 - 3291581
Alignment:
Q  167 atgtgagttgatttagtaaacaattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacgga 266  Q
    |||||||||||||| ||||| |||||| ||| |||||||||||||||||||| ||||||||||||| |   ||||| |||||||| ||||||| ||| ||    
T  3291483 atgtgagttgatttcgtaaataattattagcctttgattttaaaaaatagacggttgagatttggtgt---cgaatacgttgacatctggtgtcaacaga 3291579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 26654367 - 26654432
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||| ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||    
T  26654367 aaaatagacggttaagatttggtgtcaacgaatccattgacacctggtgtcaacggatcttgactc 26654432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 41974691 - 41974638
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  41974691 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 41974638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 38576301 - 38576349
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  38576301 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 38576349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 22320437 - 22320367
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    |||||||||  || ||||||||| |||||||||||||||||||||||  | |||||||| |||||||||||    
T  22320437 aaaatagacgattaagatttggtgtcaacgaatccgttgacacctggcatcaacggatcctgactctctct 22320367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 37064900 - 37064799
Alignment:
Q  188 aattataagcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatata 287  Q
    |||||| |||||||||||  ||||||| ||| |||| |||||||| |||| |||| |||||||||||||||| ||| |||| ||||| | | ||||||||    
T  37064900 aattattagcttttgatta-aaaaaattgacggttgtgatttggtgtcaatgaattcgttgacacctggtgtcaacagatcctgactatatatatatata 37064802  T
Q  288 taa 290  Q
    |||    
T  37064801 taa 37064799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 37732872 - 37732810
Alignment:
Q  227 tttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||| |||||||||||||||||||| ||||| |||||||| ||||||| | ||||||||||    
T  37732872 tttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctgactctatatatatatata 37732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 31641560 - 31641504
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||    
T  31641560 agatttggtgtcaacgaatccattgacacctggtgtcaatggatcctgactctctct 31641504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 3165125 - 3165176
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||| ||||||    
T  3165125 agatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctgactc 3165176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 8373698 - 8373748
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    ||||||| ||||||||||||||||||| |||||| |||||||| |||||||    
T  8373698 atttggtgtcaacgaatccgttgacacttggtgtcaacggatcctgactct 8373748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 31602075 - 31602021
Alignment:
Q  214 tagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||| ||| ||||    
T  31602075 tagacggttgagatttggtgtcaacgaattcgttgacacctggtgtcaaccgatc 31602021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 8298309 - 8298265
Alignment:
Q  211 aaatagacagttgagatttggtatcaacgaatccgttgacacctg 255  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||    
T  8298309 aaatagacggttgagatttggtgtcaacgaatccgttaacacctg 8298265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 31642065 - 31642141
Alignment:
Q  199 tttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||  ||| ||| ||| ||||||||||||| ||||||||| |||||||| ||||||| || ||||| ||||||    
T  31642065 tttgattaaaaacaatcgacggttgagatttggtgtcaacgaattcgttgacatctggtgtcaatggatcctgactc 31642141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 32414527 - 32414571
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||    
T  32414527 agatttggtgtcaacgaatccgttgacacctggtgtcaacagatc 32414571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 8996973 - 8997028
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| ||||| |||| ||||||||||||| | |||||||| ||||||    
T  8996973 gttgagatttggtgtcaacaaatcagttgacacctggtatcaacggatcctgactc 8997028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 32979828 - 32979883
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    |||||||| | ||| ||| |||||||||||||||| |||||||| |||||||||||    
T  32979828 gatttggtgttaacaaattcgttgacacctggtgtcaacggatcctgactctctct 32979883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 8372960 - 8372918
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||    
T  8372960 atttggtgtcaacgaatccgttgacaccaggtgtcaacggatc 8372918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 9197143 - 9197101
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  9197143 gatttggtgtcaacgaattcgttgacacctggtgtcaacggat 9197101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 11686275 - 11686241
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtg 258  Q
    ||||||||| |||||||||||||||||||||||||    
T  11686275 agatttggtgtcaacgaatccgttgacacctggtg 11686241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 17725658 - 17725720
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatata 287  Q
    |||||||| ||||||||| |||||||||||| ||| |||||||| || |||| | ||||||||    
T  17725658 gatttggtgtcaacgaattcgttgacacctgctgtcaacggatcctgtctctatatatatata 17725720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 26652341 - 26652291
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| | ||||||| |||||||||||||||| |||||||| ||||||    
T  26652341 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcctgactc 26652291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 38628328 - 38628258
Alignment:
Q  195 agcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacgg 265  Q
    ||||||||||   |||||||| || ||| |||||| || |||||||||||||||| ||||||||| |||||    
T  38628328 agcttttgatcaaaaaaaataaacggttaagattttgtgtcaacgaatccgttgatacctggtgtcaacgg 38628258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 37025058 - 37024990
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||||||||| ||||||| ||||||| |||||||| | ||| | | ||||||||||    
T  37025058 gttgagatttggtgtcaacgaatctgttgaca-ctggtgtcaacggatcctaactatatatatatatata 37024990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 45907 - 45967
Alignment:
Q  208 aaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||| ||||| ||||||| ||||||||| | |||||||||||||  ||||||||    
T  45907 aaaatatagacggttgatatttggtgtcaacgaattcattgacacctggtgccaacggatc 45967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 27441515 - 27441471
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||| | ||||||||| |||||||||||||||| ||||||||    
T  27441515 agatttgatgtcaacgaattcgttgacacctggtgtcaacggatc 27441471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 28929894 - 28929850
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||| ||||||| || |||||    
T  28929894 agatttggtgtcaacgaatccgttgacatctggtgtcaatggatc 28929850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 13263491 - 13263572
Alignment:
Q  195 agcttttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactct 276  Q
    ||||||||||| || |  |||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||    
T  13263491 agcttttgattatagactatagacggttgagatttggtgtcaacgaatccattgacacctggtgtcaacggatcctgactct 13263572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 25469090 - 25469155
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||    
T  25469090 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatatata 25469155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 30663410 - 30663342
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatat 288  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||| | |||||||||    
T  30663410 gttgagatttggtgtcaacgaatccgttgatacctggtgtcaacggatcctgactctttttatatatat 30663342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 46812180 - 46812231
Alignment:
Q  213 atagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacg 264  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  46812180 atagacggttgagatttggtgtcaacgaatccgttgacacctggtgttaacg 46812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 34308525 - 34308456
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||| ||||||| ||||||||| |||||||||||||||| |||||||| || |||||||| ||||||||    
T  34308525 gttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctgtctctctctctatatata 34308456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 30932795 - 30932863
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatat 288  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||| | ||||| | |||||||||    
T  30932795 gttgagatttggtgccaacgaatccgttgacacctggtgtcaacggatcctcactctatatatatatat 30932863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 34309230 - 34309278
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  34309230 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 34309278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 4433848 - 4433895
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  4433848 ttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 4433895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 30663976 - 30664031
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  30663976 gttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctgactc 30664031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 49680861 - 49680815
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  49680861 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 49680815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 8988548 - 8988617
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||| ||||||||||||||||||||| | |||||| | |||| ||| |||||||||    
T  8988548 gttgagatttggtgtcaaggaatccgttgacacctggtgtcagcggatcttaactccctcgatatatata 8988617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 28181593 - 28181516
Alignment:
Q  212 aatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| ||||||||||||| ||||||||| |||||||||| ||||| |||||||| | ||| | | ||||||||||    
T  28181593 aatagacggttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacggatcctcactatatatatatatata 28181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 37853141 - 37853190
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  37853141 atttggtgtcaacgaatccgttgacacctgatgttaacggatcctgactc 37853190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 7406310 - 7406242
Alignment:
Q  207 taaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||| |||||  ||||||||||||| ||||||||| |||| ||||||||||| |||||||| ||||||    
T  7406310 taaaagatagagggttgagatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctgactc 7406242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 10121552 - 10121600
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  10121552 gttgagatttggtgtcaaccaatccgttgacacctggtgtcaacggatc 10121600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 13262885 - 13262837
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  13262885 gttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatc 13262837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 25468583 - 25468507
Alignment:
Q  199 tttgattttaaaaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||  ||| ||| ||| ||||||||||||| |||| ||||||||||||||||||||| || ||||| ||||||    
T  25468583 tttgattaaaaacaatcgacggttgagatttggtgtcaatgaatccgttgacacctggtgtcaatggatcctgactc 25468507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 4439207 - 4439254
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  4439207 ttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatc 4439254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 8987842 - 8987787
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||| |||| ||||||    
T  8987842 gttgagatttggtgtcaacgaatccgttgacacctgatgtcaaccgatcctgactc 8987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 36389837 - 36389758
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||| || |||||||||| ||| | |||||||||||||| ||||| |||||||| ||||| | | ||||||||||    
T  36389837 aaaatagacggtcgagatttggtgtcagcaaatccgttgacaccaggtgtcaacggatcctgactatatatatatatata 36389758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 7559201 - 7559247
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  7559201 tgagatttggtgtcaacggatccgttgacacctggtgtcaacggatc 7559247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 19172580 - 19172630
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||| |||||||||||||||||||||||||| || ||||| ||||||    
T  19172580 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactc 19172630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 28182062 - 28182120
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| ||| ||||||||| |||| ||||||||||||||||||||| ||| ||||    
T  28182062 aaaatagacggttaagatttggtgtcaaagaatccgttgacacctggtgtcaacagatc 28182120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 45818067 - 45818006
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatata 287  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| | ||||| | ||||||||    
T  45818067 atttggtgtcaatgaatccgttgacacctggtgtcaacggatcttaactctatatatatata 45818006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 168942 - 168894
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| |||| ||||||| ||||||||||||| ||||||||    
T  168942 gttgagatttggtgtcaatgaatccgctgacacctggtgtcaacggatc 168894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 19171825 - 19171761
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    |||||||| ||||||||||||||||||| || ||| ||||||||  |||||| | ||||||||||    
T  19171825 gatttggtgtcaacgaatccgttgacacttgatgtcaacggatcccgactctatatatatatata 19171761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 27256712 - 27256760
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||| ||||||| ||||||||| |||||||||||||||| ||||||||    
T  27256712 gttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatc 27256760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 47967910 - 47967866
Alignment:
Q  224 agatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  47967910 agatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 47967866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 7558499 - 7558432
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||| ||||| ||||||||||||| |||||| |||||||| |  |||| | ||||||||||    
T  7558499 tgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatcctatctctatatatatatata 7558432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 10120830 - 10120787
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||    
T  10120830 gatttggtgtcaaccaatccgttgacacctggtgtcaacggatc 10120787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 11548851 - 11548804
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||| || |||||||||| ||||||||||||||| ||||||||    
T  11548851 ttgagatttagtgtcaacgaatctgttgacacctggtgtcaacggatc 11548804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 17171977 - 17171914
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| ||||||||| |||||||||||||||| |||||||| |  |||| | ||||||||||    
T  17171977 atttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctctatatatatatata 17171914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 17172667 - 17172710
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||  |||||||||||||||||||||||||| ||||||||    
T  17172667 gatttggcgtcaacgaatccgttgacacctggtgtcaacggatc 17172710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 24992017 - 24991974
Alignment:
Q  225 gatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  24992017 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatc 24991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 32038535 - 32038492
Alignment:
Q  214 tagacagttgagatttggtatcaacgaatccgttgacacctggt 257  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  32038535 tagacggttgagatttggtgtcaacgaattcgttgacacctggt 32038492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 11704810 - 11704856
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||| ||||||||||||||||||| |||||| || |||||    
T  11704810 tgagatttggtgtcaacgaatccgttgacacttggtgtcaatggatc 11704856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 46391880 - 46391914
Alignment:
Q  234 tcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||||||||||||||||||||||||| ||||||||    
T  46391880 tcaacgaatccgttgacacctggtgtcaacggatc 46391914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 23026645 - 23026600
Alignment:
Q  210 aaaatagacagttgagatttggtatcaacgaatccgttgacacctg 255  Q
    |||||| | |||||||||||| | ||||||||||||||||||||||    
T  23026645 aaaataaatagttgagatttgatgtcaacgaatccgttgacacctg 23026600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 49681673 - 49681742
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||||||||| |||||| || |||||| | ||||||| |||||||| || |||| | ||||||||||    
T  49681673 gttgagatttggtgtcaacggattcgttgatatctggtgtcaacggatcctgtctctatatatatatata 49681742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 169627 - 169675
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    ||||||||||||| ||||  ||| |||||||||||||||| ||||||||    
T  169627 gttgagatttggtgtcaataaattcgttgacacctggtgtcaacggatc 169675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 26644 - 26589
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  26644 gttgtgatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 26589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 22076 - 22139
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatatata 289  Q
    ||||||| |||||||||||||||||||||||||| |||||||| || |||| | ||||||||||    
T  22076 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctctatatatatatata 22139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 15075 - 15020
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||||||||| |||| ||||||||||||||  ||||| |||||||| ||||||    
T  15075 gttgagatttggtgtcaatgaatccgttgacactaggtgtcaacggatcctgactc 15020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 15858 - 15897
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgt 259  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  15858 gttgagatttggtgtcaacgaattcgttgacacctggtgt 15897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 15134 - 15080
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgact 274  Q
    ||||||||||||| |||| ||||||||||||||  ||||| |||||||| |||||    
T  15134 gttgagatttggtgtcaatgaatccgttgacactaggtgtcaacggatcctgact 15080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 23728 - 23788
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctct 280  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||| | |||||||||    
T  23728 gttgagatttggtgtcaacgaatccgttgacaactggtgtcaatggatcctaactctctct 23788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 428901 - 428968
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactctctctatatata 287  Q
    ||||||||||||| ||||||||| |||||| ||| ||||| |||||||| ||||||| | ||||||||    
T  428901 gttgagatttggtgtcaacgaattcgttgataccgggtgtcaacggatcctgactctatatatatata 428968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 802 - 748
Alignment:
Q  221 ttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||||||||||| |||||||||||||||| ||||||||| || ||||| ||||||    
T  802 ttgagatttggtgtcaacgaatccgttgaaacctggtgtcaatggatcctgactc 748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 5385 - 5434
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  5385 atttggtgtcaacaaatccgttgacacctggtgtcaacggatcctgactc 5434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 39942 - 39901
Alignment:
Q  226 atttggtatcaacgaatccgttgacacctggtgttaacggat 267  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  39942 atttggtgtcaacgaatccgttgacacctggtgtcaacggat 39901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1213 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 1949 - 1893
Alignment:
Q  219 agttgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    ||||| |||||||| |||||||||||||||||| ||| ||| |||||||| ||||||    
T  1949 agttgtgatttggtgtcaacgaatccgttgacatctgctgtcaacggatcttgactc 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 6886 - 6939
Alignment:
Q  222 tgagatttggtatcaacgaatccgttgacacctggtgttaacggatcatgactc 275  Q
    |||| |||||| |||||||||  ||||||||||||||| |||||||| ||||||    
T  6886 tgaggtttggtgtcaacgaatttgttgacacctggtgtcaacggatcctgactc 6939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 1639 - 1591
Alignment:
Q  220 gttgagatttggtatcaacgaatccgttgacacctggtgttaacggatc 268  Q
    |||| |||||||| ||||||||| |||||||||||||||| ||| ||||    
T  1639 gttgggatttggtgtcaacgaattcgttgacacctggtgtcaaccgatc 1591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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