View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_2 (Length: 780)
Name: NF18153_high_2
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 242 - 404
Target Start/End: Original strand, 9371448 - 9371610
Alignment:
| Q |
242 |
ggaagatttgttttgctttaaaaaatttaaaattgtgatgcgccacttttttacatggactatacgataatcgatgtaaaaaagtttcataaaatctgta |
341 |
Q |
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| T |
9371448 |
ggaagatttgttttgctttaaaaaatttaaaattgtgatgcgccacttttttacatggactatacgataatcgatgtaaaaaagtttcataaaatctgta |
9371547 |
T |
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| Q |
342 |
ttttgtattaatgggagtataccttatagtactctttgattaatatatgctactttatttgtt |
404 |
Q |
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| T |
9371548 |
ttttgtattaatgggagtataccttatagtactctttgattaatatatgctactttatttgtt |
9371610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 559 - 741
Target Start/End: Original strand, 9371800 - 9371985
Alignment:
| Q |
559 |
tgaacataaaatatcatgtacgagaatattctcccatctaatgctattataaacaagttttcacagaaagcttattttaccctgtaaattcgtagacttt |
658 |
Q |
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| T |
9371800 |
tgaacataaaatatgatgtacgagaatattctcccatctaatgctattataaacaagttttcacacaaagcttattttaccctgtaaattcgtagatttt |
9371899 |
T |
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| Q |
659 |
cttgttgaggtcatgttgagaattgtcttaaaattgatgat---aggttcgtaaaaaatcgtgatacgatttggagaaatcggagc |
741 |
Q |
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| T |
9371900 |
cttgttgaggtcatgttgaaaattgtcttaaaattgatgattaaaggttcgtaaaaaatcgtgacacgatttggagaaatcagagc |
9371985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 9371225 - 9371346
Alignment:
| Q |
12 |
aagaaaatggagtggaaaagtttgtggtcaaatgtaatatagggtttctttgctcatttcatatatagtttgcaaatcctacttagtagattattggtaa |
111 |
Q |
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| T |
9371225 |
aagaatatggagtggaaaggtttgtggtcaaatgtaatatagggtttctttgctcatttcatatatagtttgcaaatcctacttagtatattattggtaa |
9371324 |
T |
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| Q |
112 |
gtaggttaaataatcagttatg |
133 |
Q |
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| T |
9371325 |
gtagtttaaataatcagttatg |
9371346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 9371620 - 9371706
Alignment:
| Q |
386 |
atatgctactttatttgttaaaaataatcatcactgactcagcatgactatacaagagatactagttgtattcgaaagtaagcaaag |
472 |
Q |
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| T |
9371620 |
atatgctactttatttgttaaaaataatcatcactgactcagcatgactatgcaagagatactagttgtattcgaaagtaggcaaag |
9371706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 674 - 750
Target Start/End: Complemental strand, 29796853 - 29796774
Alignment:
| Q |
674 |
ttgagaattgtcttaaaattgatgat---aggttcgtaaaaaatcgtgatacgatttggagaaatcggagcacgatttta |
750 |
Q |
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||||||||||||| |||||||||||| || |||| ||||||||||| | ||||| |||||||||| ||||||||||| |
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| T |
29796853 |
ttgagaattgtctcaaaattgatgattgaagattcggcaaaaatcgtgacatgattttgagaaatcggggcacgatttta |
29796774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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