View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_20 (Length: 445)

Name: NF18153_high_20
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_20
NF18153_high_20
[»] chr2 (3 HSPs)
chr2 (10-185)||(19705611-19705786)
chr2 (244-428)||(19705363-19705547)
chr2 (78-177)||(23215766-23215865)
[»] chr8 (4 HSPs)
chr8 (244-405)||(19464066-19464226)
chr8 (244-405)||(19561746-19561906)
chr8 (21-185)||(19464283-19464447)
chr8 (21-185)||(19561963-19562127)
[»] chr1 (6 HSPs)
chr1 (244-405)||(22002784-22002945)
chr1 (244-405)||(22009055-22009216)
chr1 (21-180)||(22003007-22003166)
chr1 (21-180)||(22009278-22009437)
chr1 (361-415)||(22002712-22002766)
chr1 (361-415)||(22008983-22009037)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 19705786 - 19705611
Alignment:
Q  10 attattctagatttagcaagtaaaccattaacattaaaataaaatgagaatgatgaaaaagaacttacaaatttgatatgcttccagaaattttctcaac 109  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19705786 attattctggatttagcaagtaaaccattaacattagaataaaatgagaatgatgaaaaagaacttacaaatttggtatgcttccagaaattttctcaac 19705687  T
Q  110 tttaaagctagaatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaatcataagg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19705686 tttaaagctagaatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaatcacaagg 19705611  T

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Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 244 - 428
Target Start/End: Complemental strand, 19705547 - 19705363
Alignment:
Q  244 tcaaggatagttcacacaacccataaatctaacgaaataacaaaactctttacatcttcgattgagatttaagtgaggtgagggtgattgaacgtgagag 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  19705547 tcaaggatagttcacacaacccataaatctaacgaaataacaaaagtctttacctctttgattgagatttaagtgaggtgagggtgattgaacgtgagag 19705448  T
Q  344 tttgaaactgaaggtttgattcaggattctgagagattgagggttcgattgagatttcagtgaggtgagattcttcgtgagggtt 428  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     |||| ||||||||||||||||||    
T  19705447 tttgaaactgaaggttcgattcaggattctgagagattgagggttcgattaagattttctataggtcagattcttcgtgagggtt 19705363  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 23215865 - 23215766
Alignment:
Q  78 aaatttgatatgcttccagaaattttctcaactttaaagctagaatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaa 177  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||| | || ||||||||||||||||||||    
T  23215865 aaatttgttatgcctccagaaattttctcaactttaaagcaagaatcacctaaacttgaccaggtcttgaacatgtccttgcacaaattactgcattcaa 23215766  T

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Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 19464226 - 19464066
Alignment:
Q  244 tcaaggatagttcacacaacccataaatctaacgaaataacaaaactctttacatcttcgattgagatttaagtgaggtgagggtgattgaacgtgagag 343  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19464226 tcaaagatagttcacacaacccataaatctaacgaaataacaaaaatctttacctcttcgattgagatttaagtgaggtgagggtgattgaacgtgagag 19464127  T
Q  344 tttgaaactgaaggtttgattcaggattctgagagattgagggttcgattgagatttcagtg 405  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19464126 tttgagactgaagg-ttgattcaggattctgagagattgagggttcgattgagatttcagtg 19464066  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 19561906 - 19561746
Alignment:
Q  244 tcaaggatagttcacacaacccataaatctaacgaaataacaaaactctttacatcttcgattgagatttaagtgaggtgagggtgattgaacgtgagag 343  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19561906 tcaaagatagttcacacaacccataaatctaacgaaataacaaaaatctttacctcttcgattgagatttaagtgaggtgagggtgattgaacgtgagag 19561807  T
Q  344 tttgaaactgaaggtttgattcaggattctgagagattgagggttcgattgagatttcagtg 405  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19561806 tttgagactgaagg-ttgattcaggattctgagagattgagggttcgattgagatttcagtg 19561746  T

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Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 19464447 - 19464283
Alignment:
Q  21 tttagcaagtaaaccattaacattaaaataaaatgagaatgatgaaaaagaacttacaaatttgatatgcttccagaaattttctcaactttaaagctag 120  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||| ||||| |||| ||| ||||||||||||||||||||    
T  19464447 tttagcaagtaaactattaacattagaataaaatgagaatgatgaaaaagaactcacgaatttgttatgcctccaaaaaatttctcaactttaaagctag 19464348  T
Q  121 aatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaatcataagg 185  Q
    ||||||||||||||||  | |||||||||||||| | ||||||||||||||||||||||| ||||    
T  19464347 aatcgcctaaatttgaataggtcttgaacatatatttgcacaaattactgcattcaatcacaagg 19464283  T

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Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 19562127 - 19561963
Alignment:
Q  21 tttagcaagtaaaccattaacattaaaataaaatgagaatgatgaaaaagaacttacaaatttgatatgcttccagaaattttctcaactttaaagctag 120  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||| ||||| |||| ||| ||||||||||||||||||||    
T  19562127 tttagcaagtaaactattaacattagaataaaatgagaatgatgaaaaagaactcacgaatttgttatgcctccaaaaaatttctcaactttaaagctag 19562028  T
Q  121 aatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaatcataagg 185  Q
    ||||||||||||||||  | |||||||||||||| | ||||||||||||||||||||||| ||||    
T  19562027 aatcgcctaaatttgaataggtcttgaacatatatttgcacaaattactgcattcaatcacaagg 19561963  T

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Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 22002945 - 22002784
Alignment:
Q  244 tcaaggatagttcacacaacccataaatctaacgaaataacaaaac-tctttacatcttcgattgagatttaagtgaggtgagggtgattgaacgtgaga 342  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||  | ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  22002945 tcaaagatagttcacacaacccataaatctaacgaaataaaaaaaaatatttacctcttcgattgagatttaagtgaggtgagggtgattgaacttgaga 22002846  T
Q  343 gtttgaaactgaaggtttgattcaggattctgagagattgagggttcgattgagatttcagtg 405  Q
    |||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22002845 gtttgagactgaa-gtttgattcaggattctgagagattgagggatcgattgagatttcagtg 22002784  T

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Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 22009216 - 22009055
Alignment:
Q  244 tcaaggatagttcacacaacccataaatctaacgaaataacaaaac-tctttacatcttcgattgagatttaagtgaggtgagggtgattgaacgtgaga 342  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||  | ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  22009216 tcaaagatagttcacacaacccataaatctaacgaaataaaaaaaaatatttacctcttcgattgagatttaagtgaggtgagggtgattgaacttgaga 22009117  T
Q  343 gtttgaaactgaaggtttgattcaggattctgagagattgagggttcgattgagatttcagtg 405  Q
    |||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22009116 gtttgagactgaa-gtttgattcaggattctgagagattgagggatcgattgagatttcagtg 22009055  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 22003166 - 22003007
Alignment:
Q  21 tttagcaagtaaaccattaacattaaaataaaatgagaatgatgaaaaagaacttacaaatttgatatgcttccagaaattttctcaactttaaagctag 120  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||| ||||| |||| |||  |||||||||||||||||||    
T  22003166 tttagcaagtaaaccattaacattagaataaaatgagaatgatgaaaaagaactcacgaatttgttatgcctccaaaaaaattctcaactttaaagctag 22003067  T
Q  121 aatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaatca 180  Q
    |||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||    
T  22003066 aatcgcctaaatttgaacaggtcttgaacatatatttgcacaaattactgcattcaatca 22003007  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 22009437 - 22009278
Alignment:
Q  21 tttagcaagtaaaccattaacattaaaataaaatgagaatgatgaaaaagaacttacaaatttgatatgcttccagaaattttctcaactttaaagctag 120  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||| ||||| |||| |||  |||||||||||||||||||    
T  22009437 tttagcaagtaaaccattaacattagaataaaatgagaatgatgaaaaagaactcacgaatttgttatgcctccaaaaaaattctcaactttaaagctag 22009338  T
Q  121 aatcgcctaaatttgaccacgtcttgaacatatactagcacaaattactgcattcaatca 180  Q
    |||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||    
T  22009337 aatcgcctaaatttgaacaggtcttgaacatatatttgcacaaattactgcattcaatca 22009278  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 22002766 - 22002712
Alignment:
Q  361 gattcaggattctgagagattgagggttcgattgagatttcagtgaggtgagatt 415  Q
    |||||||  ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  22002766 gattcagagttctgagagattgagggttcgattgaggtttctgtgcggtgagatt 22002712  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 22009037 - 22008983
Alignment:
Q  361 gattcaggattctgagagattgagggttcgattgagatttcagtgaggtgagatt 415  Q
    |||||||  ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  22009037 gattcagagttctgagagattgagggttcgattgaggtttctgtgcggtgagatt 22008983  T

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