View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_26 (Length: 386)
Name: NF18153_high_26
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 31524578 - 31524430
Alignment:
| Q |
228 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31524578 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
31524479 |
T |
|
| Q |
328 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524478 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
31524430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 31524784 - 31524673
Alignment:
| Q |
20 |
ggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtca |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
31524784 |
ggaagcgtatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacaatctacctagaagtca |
31524685 |
T |
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| Q |
120 |
gacgctcgtctg |
131 |
Q |
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||||| |||||| |
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| T |
31524684 |
gacgcccgtctg |
31524673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 228 - 376
Target Start/End: Original strand, 33366922 - 33367070
Alignment:
| Q |
228 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33366922 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
33367021 |
T |
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| Q |
328 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367022 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
33367070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 33366717 - 33366821
Alignment:
| Q |
20 |
ggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtca |
119 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33366717 |
ggaagcgtatggttgaagcacgtaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacactctacctagaagtca |
33366816 |
T |
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| Q |
120 |
gacgc |
124 |
Q |
| |
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||||| |
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| T |
33366817 |
gacgc |
33366821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 49194536 - 49194388
Alignment:
| Q |
228 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49194536 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
49194437 |
T |
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| Q |
328 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194436 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
49194388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 49194741 - 49194637
Alignment:
| Q |
20 |
ggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtca |
119 |
Q |
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|||||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
49194741 |
ggaagcgtatgtttgaagcacgtaacataccaataggtgtaagtaacgaagttcggtgctccaagggttgggaacaatgatacattctacctagaagtca |
49194642 |
T |
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| Q |
120 |
gacgc |
124 |
Q |
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||||| |
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| T |
49194641 |
gacgc |
49194637 |
T |
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