View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_30 (Length: 365)
Name: NF18153_high_30
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 33601881 - 33602221
Alignment:
| Q |
6 |
ctttaatattatttatgacattgtataaaattgtgcaaataaaatatcaatcacaacgtttcatggataaaacaattcaattacaatggaagaaaagaga |
105 |
Q |
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| T |
33601881 |
ctttaatattgtttgtgacattgtataaaattgtgcaaataaaatatcaatcacaattttttatggataaaacaattcaattacaatggaagaaaagaga |
33601980 |
T |
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| Q |
106 |
aaactcagaaatgcttctagtcttaatgtatgttggaatgagacgcaaacatcctttatatagtgcnnnnnnnnnnnnnnnnnnnnnnnngaacgtctaa |
205 |
Q |
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| T |
33601981 |
aaactcagaaatgcttctagtcttagtgtatgttggaatgagatgcaaacaccctttatatagtgcgaaaaccgaaatggaaataaaaaagaacgtctaa |
33602080 |
T |
|
| Q |
206 |
gatcgaatgaccgttgagaaacagacttccttgatcaaagcgacaattaaactggacgtgaaatgtattggatcgtggagcgtgcacgtgggcgtatgtt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602081 |
gatcgaatgaccgttgagaaacagacttccttgatcaaaacgacaattaaactggacgtgaaatgtattggatcgtggagcgtgcacgtgggcgtatgtt |
33602180 |
T |
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| Q |
306 |
cggcacacattggtgtgtatcaaacgcatgcatgctgcaaa |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602181 |
cggcacacattggtgtgtatcaaacgcatgcatgctgcaaa |
33602221 |
T |
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