View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_34 (Length: 359)
Name: NF18153_high_34
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 51574519 - 51574713
Alignment:
| Q |
14 |
tactctacatgatgacacgagtatatgtagccaatcaaatgcaaaatgggataattaaaagaaaaaactaaggatgaaacatttaagagaaatctgagtt |
113 |
Q |
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| T |
51574519 |
tactctacatgatgacaagagtatatgtagccaatcaaatgcaaaatgggataattaagagaaaaaactaaggatgaaactttcaacagaaatctaagtt |
51574618 |
T |
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| Q |
114 |
caatttatagttttaacaattattgatcagactttacttacgtctcgatcggattccatattactagggagccttcccttaggaaccaaagagtt |
208 |
Q |
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| T |
51574619 |
caatttatagttttaacaattcttgatcagactttacttacgtctcgatcggattccatattactagggagccttcccttaggaaccaaagagtt |
51574713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 230 - 341
Target Start/End: Original strand, 51574737 - 51574848
Alignment:
| Q |
230 |
taacattttaattacattgatggtcaaagatacatattaagccatagcaaatatagaataaccatggcaataattattacaacgacagaaggcaaaattt |
329 |
Q |
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| T |
51574737 |
taacattttaattacattcatggtcaaagatacatattaagccatagcaaatatagaagaaccatggcaataattattactacgacagaaggcaaaattt |
51574836 |
T |
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| Q |
330 |
taaggacggagg |
341 |
Q |
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| T |
51574837 |
tatggacggagg |
51574848 |
T |
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