View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_35 (Length: 353)

Name: NF18153_high_35
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_35
NF18153_high_35
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-343)||(2747-3109)
[»] chr3 (25 HSPs)
chr3 (94-342)||(41455893-41456142)
chr3 (176-339)||(18914193-18914356)
chr3 (4-80)||(41455783-41455860)
chr3 (1-55)||(24192274-24192328)
chr3 (218-274)||(18136118-18136174)
chr3 (1-39)||(55499734-55499772)
chr3 (5-81)||(13324412-13324488)
chr3 (4-79)||(14865202-14865278)
chr3 (303-339)||(18900193-18900229)
chr3 (1-81)||(18914470-18914550)
chr3 (4-79)||(19235691-19235766)
chr3 (305-343)||(13968791-13968829)
chr3 (305-343)||(13974266-13974304)
chr3 (305-343)||(14084712-14084750)
chr3 (305-343)||(14090113-14090151)
chr3 (1-39)||(16802075-16802113)
chr3 (305-339)||(16802407-16802441)
chr3 (305-339)||(17157246-17157280)
chr3 (305-343)||(24123161-24123199)
chr3 (305-339)||(24191947-24191981)
chr3 (305-343)||(49399654-49399692)
chr3 (283-338)||(19235929-19235988)
chr3 (283-339)||(19443658-19443715)
chr3 (303-339)||(18889154-18889190)
chr3 (306-342)||(42109307-42109342)
[»] chr2 (22 HSPs)
chr2 (1-343)||(26582856-26583223)
chr2 (79-343)||(23169027-23169294)
chr2 (79-343)||(23580284-23580551)
chr2 (4-65)||(5706707-5706768)
chr2 (4-79)||(25181523-25181597)
chr2 (4-79)||(29281354-29281429)
chr2 (1-39)||(23878347-23878385)
chr2 (4-64)||(9949-10009)
chr2 (4-79)||(26884564-26884639)
chr2 (4-59)||(27208333-27208388)
chr2 (4-59)||(27210668-27210723)
chr2 (1-39)||(21907776-21907814)
chr2 (1-39)||(23063082-23063120)
chr2 (283-338)||(20724221-20724277)
chr2 (305-343)||(200822-200860)
chr2 (305-343)||(6744282-6744320)
chr2 (1-39)||(23089642-23089680)
chr2 (305-339)||(23089988-23090022)
chr2 (305-339)||(23102416-23102450)
chr2 (305-343)||(27367541-27367579)
chr2 (4-37)||(23101892-23101925)
chr2 (303-339)||(23878024-23878060)
[»] scaffold0026 (2 HSPs)
scaffold0026 (77-343)||(12606-12872)
scaffold0026 (25-79)||(12534-12589)
[»] chr6 (33 HSPs)
chr6 (3-343)||(29614830-29615195)
chr6 (228-342)||(12167420-12167533)
chr6 (228-342)||(19786753-19786866)
chr6 (228-342)||(19877513-19877626)
chr6 (228-342)||(19883289-19883402)
chr6 (228-342)||(19286329-19286442)
chr6 (4-80)||(12167659-12167735)
chr6 (4-80)||(19286568-19286644)
chr6 (4-80)||(19877752-19877828)
chr6 (4-73)||(19786552-19786621)
chr6 (4-65)||(34640672-34640733)
chr6 (4-65)||(34647346-34647407)
chr6 (4-80)||(19883528-19883604)
chr6 (4-67)||(25470387-25470451)
chr6 (1-55)||(18799832-18799886)
chr6 (4-64)||(20008570-20008630)
chr6 (283-343)||(11289537-11289598)
chr6 (4-65)||(21365161-21365222)
chr6 (4-65)||(23969143-23969204)
chr6 (4-79)||(9099694-9099769)
chr6 (4-79)||(19300359-19300434)
chr6 (4-79)||(29097222-29097297)
chr6 (305-339)||(10582794-10582828)
chr6 (305-339)||(18788544-18788578)
chr6 (305-339)||(18799524-18799558)
chr6 (1-39)||(21565799-21565837)
chr6 (305-339)||(21566145-21566179)
chr6 (305-343)||(24562463-24562501)
chr6 (283-338)||(9099932-9099991)
chr6 (283-338)||(29097000-29097059)
chr6 (303-339)||(24513782-24513817)
chr6 (3-39)||(25396582-25396618)
chr6 (303-339)||(31251557-31251593)
[»] scaffold0029 (4 HSPs)
scaffold0029 (77-343)||(110939-111213)
scaffold0029 (25-66)||(111243-111284)
scaffold0029 (4-59)||(91824-91879)
scaffold0029 (4-59)||(97550-97605)
[»] chr7 (30 HSPs)
chr7 (228-343)||(13742686-13742801)
chr7 (228-342)||(13006489-13006602)
chr7 (1-80)||(13743006-13743083)
chr7 (228-343)||(13123853-13123967)
chr7 (4-80)||(13006728-13006804)
chr7 (228-343)||(12710782-12710896)
chr7 (4-80)||(12710528-12710604)
chr7 (4-80)||(13123599-13123675)
chr7 (4-59)||(12591327-12591382)
chr7 (1-59)||(14320251-14320309)
chr7 (4-79)||(16090443-16090518)
chr7 (1-39)||(13678861-13678899)
chr7 (1-39)||(16676722-16676760)
chr7 (1-39)||(17650958-17650996)
chr7 (1-39)||(20311671-20311709)
chr7 (3-39)||(11389958-11389994)
chr7 (4-38)||(2464763-2464797)
chr7 (4-38)||(3858048-3858082)
chr7 (305-343)||(4280144-4280182)
chr7 (5-39)||(11383472-11383506)
chr7 (305-339)||(11383796-11383830)
chr7 (305-339)||(11390284-11390318)
chr7 (305-339)||(14169486-14169520)
chr7 (305-339)||(14178960-14178994)
chr7 (305-343)||(19616476-19616514)
chr7 (305-339)||(20328206-20328240)
chr7 (283-343)||(12591570-12591631)
chr7 (283-339)||(31154554-31154610)
chr7 (4-37)||(46625551-46625584)
chr7 (4-79)||(29181731-29181806)
[»] chr8 (18 HSPs)
chr8 (228-343)||(23865615-23865730)
chr8 (228-343)||(19902810-19902924)
chr8 (264-342)||(17053780-17053858)
chr8 (4-80)||(23865908-23865985)
chr8 (4-64)||(24321293-24321353)
chr8 (1-39)||(14057233-14057271)
chr8 (3-39)||(25111385-25111421)
chr8 (4-39)||(18613619-18613654)
chr8 (283-339)||(10607120-10607178)
chr8 (218-272)||(19987991-19988045)
chr8 (305-343)||(23825305-23825343)
chr8 (305-339)||(25111027-25111061)
chr8 (305-343)||(30766907-30766945)
chr8 (270-338)||(19988110-19988178)
chr8 (303-339)||(14057563-14057599)
chr8 (306-342)||(25624680-25624715)
chr8 (306-342)||(33089001-33089036)
chr8 (283-338)||(41009392-41009448)
[»] scaffold0001 (3 HSPs)
scaffold0001 (228-343)||(174442-174557)
scaffold0001 (4-79)||(493650-493725)
scaffold0001 (3-39)||(525160-525196)
[»] chr1 (17 HSPs)
chr1 (228-342)||(41110997-41111110)
chr1 (4-80)||(41111236-41111312)
chr1 (4-64)||(20851755-20851815)
chr1 (4-64)||(20858382-20858442)
chr1 (4-64)||(21705648-21705708)
chr1 (4-79)||(18712106-18712182)
chr1 (218-274)||(20941658-20941714)
chr1 (4-59)||(21710196-21710251)
chr1 (270-339)||(20941777-20941846)
chr1 (303-339)||(19664085-19664121)
chr1 (4-79)||(19961547-19961622)
chr1 (270-339)||(20824280-20824349)
chr1 (305-343)||(21542237-21542275)
chr1 (305-343)||(42095861-42095899)
chr1 (5-37)||(20045382-20045414)
chr1 (306-342)||(21734429-21734464)
chr1 (306-342)||(21986921-21986956)
[»] scaffold1773 (3 HSPs)
scaffold1773 (238-343)||(153-257)
scaffold1773 (4-80)||(475-551)
scaffold1773 (94-212)||(324-442)
[»] chr5 (24 HSPs)
chr5 (228-342)||(23527632-23527745)
chr5 (4-80)||(23527926-23528002)
chr5 (4-64)||(22460529-22460589)
chr5 (4-64)||(19236273-19236333)
chr5 (4-79)||(34829441-34829516)
chr5 (1-38)||(18408561-18408598)
chr5 (4-79)||(20772328-20772403)
chr5 (4-79)||(20781103-20781178)
chr5 (218-274)||(22232437-22232493)
chr5 (4-64)||(22467153-22467213)
chr5 (4-79)||(24930551-24930626)
chr5 (305-343)||(1857461-1857499)
chr5 (305-343)||(21675429-21675467)
chr5 (270-339)||(22232556-22232625)
chr5 (305-339)||(23112694-23112728)
chr5 (94-183)||(23527803-23527893)
chr5 (283-338)||(24930789-24930848)
chr5 (4-65)||(28890019-28890080)
chr5 (4-65)||(28896723-28896784)
chr5 (4-65)||(28909971-28910032)
chr5 (4-65)||(28931663-28931724)
chr5 (4-65)||(28946366-28946427)
chr5 (283-339)||(34829216-34829273)
chr5 (305-337)||(22439683-22439715)
[»] chr4 (14 HSPs)
chr4 (94-212)||(8046626-8046744)
chr4 (238-343)||(8046789-8046893)
chr4 (4-65)||(53483013-53483074)
chr4 (4-80)||(8046516-8046593)
chr4 (4-68)||(11847472-11847537)
chr4 (218-274)||(14555882-14555938)
chr4 (1-55)||(14486052-14486106)
chr4 (4-79)||(16147453-16147528)
chr4 (270-339)||(14556001-14556070)
chr4 (1-39)||(15407485-15407523)
chr4 (283-339)||(1650990-1651047)
chr4 (283-339)||(15407097-15407154)
chr4 (283-338)||(15325062-15325118)
chr4 (6-81)||(27905620-27905695)
[»] scaffold0117 (2 HSPs)
scaffold0117 (228-343)||(9514-9628)
scaffold0117 (4-80)||(9260-9336)
[»] scaffold0456 (6 HSPs)
scaffold0456 (77-170)||(243-336)
scaffold0456 (77-170)||(7388-7481)
scaffold0456 (25-79)||(353-407)
scaffold0456 (25-79)||(7498-7552)
scaffold0456 (5-38)||(627-660)
scaffold0456 (5-38)||(7772-7805)
[»] scaffold0085 (1 HSPs)
scaffold0085 (4-79)||(4294-4368)
[»] scaffold0025 (2 HSPs)
scaffold0025 (1-55)||(15067-15121)
scaffold0025 (305-339)||(15414-15448)
[»] scaffold0249 (2 HSPs)
scaffold0249 (176-274)||(7568-7667)
scaffold0249 (270-339)||(7730-7798)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-79)||(30258-30336)
[»] scaffold0461 (2 HSPs)
scaffold0461 (1-39)||(666-704)
scaffold0461 (4-39)||(7605-7640)
[»] scaffold0053 (2 HSPs)
scaffold0053 (4-79)||(80113-80188)
scaffold0053 (3-55)||(81835-81887)
[»] scaffold0004 (2 HSPs)
scaffold0004 (1-68)||(116234-116302)
scaffold0004 (1-79)||(129255-129333)
[»] scaffold0138 (1 HSPs)
scaffold0138 (1-79)||(1176-1254)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-79)||(17525-17603)
[»] scaffold0476 (2 HSPs)
scaffold0476 (1-39)||(3911-3949)
scaffold0476 (305-339)||(4257-4291)
[»] scaffold0348 (2 HSPs)
scaffold0348 (270-339)||(1647-1716)
scaffold0348 (218-274)||(1528-1584)
[»] scaffold0317 (1 HSPs)
scaffold0317 (1-39)||(754-792)
[»] scaffold0310 (1 HSPs)
scaffold0310 (1-39)||(6907-6945)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-39)||(10709-10747)
[»] scaffold0124 (2 HSPs)
scaffold0124 (1-39)||(34946-34984)
scaffold0124 (305-339)||(36775-36809)
[»] scaffold0483 (1 HSPs)
scaffold0483 (4-68)||(11631-11696)
[»] scaffold0453 (1 HSPs)
scaffold0453 (4-79)||(11174-11249)
[»] scaffold0261 (1 HSPs)
scaffold0261 (4-79)||(24192-24267)
[»] scaffold0206 (1 HSPs)
scaffold0206 (4-79)||(18046-18121)
[»] scaffold0097 (1 HSPs)
scaffold0097 (283-338)||(28050-28106)
[»] scaffold0077 (4 HSPs)
scaffold0077 (222-274)||(17972-18024)
scaffold0077 (222-274)||(23605-23657)
scaffold0077 (6-39)||(4234-4267)
scaffold0077 (305-337)||(4576-4608)
[»] scaffold0720 (1 HSPs)
scaffold0720 (4-59)||(3882-3937)
[»] scaffold1853 (1 HSPs)
scaffold1853 (277-339)||(732-793)
[»] scaffold1427 (1 HSPs)
scaffold1427 (305-339)||(1025-1059)
[»] scaffold1299 (1 HSPs)
scaffold1299 (305-339)||(125-159)
[»] scaffold0334 (1 HSPs)
scaffold0334 (305-339)||(8664-8698)
[»] scaffold0301 (1 HSPs)
scaffold0301 (305-339)||(3397-3431)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-39)||(16169-16207)
[»] scaffold0107 (2 HSPs)
scaffold0107 (1-39)||(41198-41236)
scaffold0107 (305-339)||(41574-41608)
[»] scaffold0106 (3 HSPs)
scaffold0106 (305-343)||(38582-38620)
scaffold0106 (279-339)||(46688-46748)
scaffold0106 (279-339)||(50961-51021)
[»] scaffold0078 (1 HSPs)
scaffold0078 (305-339)||(17383-17417)
[»] scaffold0076 (2 HSPs)
scaffold0076 (305-343)||(30103-30141)
scaffold0076 (305-343)||(35504-35542)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-81)||(72638-72715)
[»] scaffold0028 (1 HSPs)
scaffold0028 (305-343)||(46937-46975)
[»] scaffold0023 (2 HSPs)
scaffold0023 (25-79)||(134829-134882)
scaffold0023 (283-339)||(153275-153332)
[»] scaffold0011 (1 HSPs)
scaffold0011 (305-343)||(174519-174557)
[»] scaffold0139 (1 HSPs)
scaffold0139 (3-68)||(15609-15674)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-39)||(102539-102575)


Alignment Details
Target: scaffold0634 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 3109 - 2747
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca-------------------t 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||                   |    
T  3109 gccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcat 3010  T
Q  81 tctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttgga 180  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | |||||| |||||| ||||| ||||||||||||| ||| ||||||| | | |||||    
T  3009 tctaaaatatttcctttaacttgtataacccttgtataggtaccagaatcccactagaacaagccggtgatcgaattggttgatgttagtgaatattgga 2910  T
Q  181 gataattgagtaagaaatcaagtgaatatataactaatgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagtt 280  Q
    ||| |||||||  ||||||| |||||||||||| || ||||||||  ||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  2909 gatgattgagtttgaaatcatgtgaatatataattattgaatgaatttgatgtatgcgcataattataaataattgtctatgttctggattgtttgagtt 2810  T
Q  281 gcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2809 gcggagtagtaagtcatatgaaacatatgtattagttgagttgtatgtagatatacacaggtt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 94 - 342
Target Start/End: Original strand, 41455893 - 41456142
Alignment:
Q  94 ctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttggagataattgagtaa 193  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||||||||||||     
T  41455893 ctttaacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaattgattggtgttagtaaatgttggagataattgagtag 41455992  T
Q  194 gaa-atcaagtgaatatataactaatgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtga 292  Q
    ||| || ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||| |    
T  41455993 gaagattaagtgaatatacaactattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctgaattgtttgagttacggagtagtaa 41456092  T
Q  293 gtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41456093 gtcatatgaaacatatgcattagttgagttgtatgtagatatacacaggt 41456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 18914356 - 18914193
Alignment:
Q  176 ttggagataattgagtaagaaatcaagtgaatatataac-taatgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    |||||||| |||||||| |||||||||||||||||||   |  ||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  18914356 ttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18914257  T
Q  275 tgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
     || ||||||||| || |||||||||||||||||| ||| ||  |||||||||||||||||||||    
T  18914256 ggaattgcggagttgtaagtcatatgaaacatatgtatt-gttaagttgtatgtagatatacaca 18914193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 41455783 - 41455860
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||| ||||||    
T  41455783 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgcat 41455860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24192328 - 24192274
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc 55  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  24192328 gccggtcgcttaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 18136118 - 18136174
Alignment:
Q  218 tgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  18136118 tgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 55499734 - 55499772
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  55499734 gccggtcgcttaagcgaactagacgtcgcttaagcgaag 55499772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 13324412 - 13324488
Alignment:
Q  5 gtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgcatt 81  Q
    ||||||||||||| | |||| ||||||||||||   |||||||||||||||  |||||||| ||||||||||||||||    
T  13324412 gtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcatt 13324488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 14865278 - 14865202
Alignment:
Q  4 ggtcgcttaagcgaactagccg-tcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||||||||||| |||||||||||||  |||  |||||||||| ||||||||||  ||||||||||||    
T  14865278 ggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgca 14865202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 18900229 - 18900193
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||||| ||||||||||||||||||||||    
T  18900229 acatatgcattagttgagttgtatgtagatatacaca 18900193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18914550 - 18914470
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcatt 81  Q
    |||||||||||||||||||  ||| ||||||||||||||    ||||||||||||  || |||| |||||| |||||||||    
T  18914550 gccggtcgcttaagcgaacctgccatcgcttaagcgaagatgaccttagtcagccacttttgaatttttgcctcgtgcatt 18914470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 19235691 - 19235766
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcag-ccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| |||  |||||||||||||||  |||  |||||||| ||||||||||| ||||||||||||||    
T  19235691 ggtcgcttaagcgagctactcgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-ttttgcttcgtgca 19235766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 13968791 - 13968829
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  13968791 atatgcatttgttgagttgtatgtagatatacacaggtt 13968829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 13974266 - 13974304
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  13974266 atatgcatttgttgagttgtatgtagatatacacaggtt 13974304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 14084750 - 14084712
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  14084750 atatgcatttgttgagttgtatgtagatatacacaggtt 14084712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 14090151 - 14090113
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  14090151 atatgcatttgttgagttgtatgtagatatacacaggtt 14090113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16802075 - 16802113
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  16802075 gccggtcgcttaagcgagctagccgtcgtttaagcgaag 16802113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 16802407 - 16802441
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  16802407 atatgcattagttgagttgtatgtagatatacaca 16802441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 17157280 - 17157246
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  17157280 atatgcattagttgagttgtatgtagatatacaca 17157246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 24123161 - 24123199
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24123161 atatgcatttgttgagttgtatgtagatatacacaggtt 24123199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 24191981 - 24191947
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  24191981 atatgcattagttgagttgtatgtagatatacaca 24191947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 49399692 - 49399654
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  49399692 atatgcatttgttgagttgtatgtagatatacacaggtt 49399654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 19235929 - 19235988
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 338  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  19235929 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 19235988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 19443715 - 19443658
Alignment:
Q  283 ggagtagtgagtcatatgaaacatatgcattagtcg-agttgtatgtagatatacaca 339  Q
    ||||| |||||||||||   |||||||||||||| | |||||||||||||||||||||    
T  19443715 ggagtggtgagtcatatagtacatatgcattagttggagttgtatgtagatatacaca 19443658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 18889190 - 18889154
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| | ||||||||||||||||||||||    
T  18889190 acatatgcattacttgagttgtatgtagatatacaca 18889154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 42109342 - 42109307
Alignment:
Q  306 tatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42109342 tatgcatt-gtcgagttgtatgtagatatacacaggt 42109307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 26583223 - 26582856
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctt-ttctgaacttttgcttcgtgca-------------------t 80  Q
    |||||||||||||||||||||||||||||||||||||||  || ||||||||||||| ||||||||||||| ||||||||                   |    
T  26583223 gccggtcgcttaagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcat 26583124  T
Q  81 tctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttgga 180  Q
    |||| |||||||| ||||||| |||||| |||||| |||||| |||| ||||| |||| | ||| ||||||||||||||||||||||||||| |||||||    
T  26583123 tctataatatttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgttagtaaatgttgga 26583024  T
Q  181 gataattgagtaagaaatcaagtgaatatataactaat-----gaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgttt 275  Q
    ||| |||||||| |||||| ||||||||||||  |||      |||||  | ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  26583023 gatgattgagtatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtatgttctggattgttt 26582924  T
Q  276 gagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||||||||| |||||||| ||||||||| | ||||  |||||||||||||||||||||||||    
T  26582923 gagttgcggagtagtaagtcatataaaacatatgtaatagttaagttgtatgtagatatacacaggtt 26582856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 79 - 343
Target Start/End: Original strand, 23169027 - 23169294
Alignment:
Q  79 attctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttg 178  Q
    |||||||||| |||| || ||||||||||| ||| ||||||||||  | ||||||||||| ||  |||||||||| |||| ||| ||||| | | | |||    
T  23169027 attctaaaatgtttctttcaacttgtataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttg 23169126  T
Q  179 gagataattgagtaagaaatcaagtgaat--atataactaatg-aatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgttt 275  Q
    |||||  ||||||| ||||||| ||||||  |||||||   || ||||  ||||||||| |||||||||||||||| ||||||| ||| |||||||||||    
T  23169127 gagatgtttgagtatgaaatcatgtgaatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgttt 23169226  T
Q  276 gagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||||||||| ||| |||||||| ||||| |||||| ||||||||||| ||||||||| ||||    
T  23169227 gagttgcggagtagtaagttatatgaaatatatgtattagtggagttgtatgtggatatacacgggtt 23169294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 79 - 343
Target Start/End: Original strand, 23580284 - 23580551
Alignment:
Q  79 attctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttg 178  Q
    |||||||||| |||| || ||||||||||| ||| ||||||||||  | ||||||||||| ||  |||||||||| |||| ||| ||||| | | | |||    
T  23580284 attctaaaatgtttctttcaacttgtataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttg 23580383  T
Q  179 gagataattgagtaagaaatcaagtgaat--atataactaatg-aatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgttt 275  Q
    |||||  ||||||| ||||||| ||||||  |||||||   || ||||  ||||||||| |||||||||||||||| ||||||| ||| |||||||||||    
T  23580384 gagatgtttgagtatgaaatcatgtgaatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgttt 23580483  T
Q  276 gagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||||||||| ||| |||||||| ||||| |||||| ||||||||||| ||||||||| ||||    
T  23580484 gagttgcggagtagtaagttatatgaaatatatgtattagtggagttgtatgtggatatacacgggtt 23580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 5706707 - 5706768
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5706707 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagccttttctgaac 5706768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 25181523 - 25181597
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||| ||||||||||||||||||||||  |||  ||||||||||||||||||| | ||||||||||||    
T  25181523 ggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagccttttctgaa-tcttgcttcgtgca 25181597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 29281429 - 29281354
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||||||||||||||||||||||||  |||  |||||||||| ||||||||||  ||||||||||||    
T  29281429 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgca 29281354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23878385 - 23878347
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23878385 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 23878347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 10009 - 9949
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||| ||  |||  |||| ||||||||||||||    
T  10009 ggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagccttttctgaa 9949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 26884639 - 26884564
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| || |||||||||||||  |||||||||||||||| |||||||||  ||||||||||||    
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaac-cttgcttcgtgca 26884564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 27208333 - 27208388
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||| ||| || |||||||||||||  |||||||||||||||||||    
T  27208333 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttt 27208388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 27210668 - 27210723
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||| ||| || |||||||||||||  |||||||||||||||||||    
T  27210668 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttt 27210723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21907814 - 21907776
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21907814 gccggtcgcttaagcgaactagccatcgcttaagcgaag 21907776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23063120 - 23063082
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  23063120 gccggtcgcttaagcgaaccagccgtcgcttaagcgaag 23063082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 20724277 - 20724221
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacac 338  Q
    ||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  20724277 ggagtggtgagtcatatgaatacatatgcattgttggagttgtatgtagatatacac 20724221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 200860 - 200822
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  200860 atatgcatttgttgagttgtatgtagatatacacaggtt 200822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 6744282 - 6744320
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  6744282 atatgcatttgttgagttgtatgtagatatacacaggtt 6744320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23089642 - 23089680
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  23089642 gccggtcgcttaagcgaactggacgtcgcttaagcgaag 23089680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 23089988 - 23090022
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  23089988 atatgcattagttgagttgtatgtagatatacaca 23090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 23102416 - 23102450
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  23102416 atatgcattagttgagttgtatgtagatatacaca 23102450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 27367541 - 27367579
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  27367541 atatgcatttgttgagttgtatgtagatatacacaggtt 27367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 23101892 - 23101925
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcga 37  Q
    |||||||||||||||| |||||||||||||||||    
T  23101892 ggtcgcttaagcgaaccagccgtcgcttaagcga 23101925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 23878060 - 23878024
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  23878060 acatacgcattagtggagttgtatgtagatatacaca 23878024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 77 - 343
Target Start/End: Original strand, 12606 - 12872
Alignment:
Q  77 gcattctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgt 176  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||| ||||||||||||| ||||| ||||||||||||| ||| ||||||| | | |    
T  12606 gcattctaaaatatttcctttaacttgtatatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattt 12705  T
Q  177 tggagataattgagtaagaaatcaagtgaatatataactaatgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtttg 276  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||| |    
T  12706 tggagatgattgagtaagaaatcaagtgaatgtataactattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttag 12805  T
Q  277 -agttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
     | |  ||||||||| |||||||||| | |||||   |||| ||||||||||||||||||||||||||    
T  12806 aactctcggagtagtaagtcatatgagatatatg-tgtagttgagttgtatgtagatatacacaggtt 12872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 12534 - 12589
Alignment:
Q  25 gtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgca 12589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 29614830 - 29615195
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat-------------------tct 83  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||                   |||    
T  29614830 cggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctt--ctgaacttttgtttcgtgcatgagggaacttcttgagcattct 29614927  T
Q  84 aaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttggagat 183  Q
    | |||||||||||||||| |||||| ||||| ||||||| | ||||| || |||| | ||| |||||| |||||||||||||||||||| ||||||||||    
T  29614928 ataatatttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgttagtaaatgttggagat 29615027  T
Q  184 aattgagtaagaaatcaagtgaatat--------ataactaatg-aatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
     |||||||| |||| |||||||||||        |||||   || ||||  | ||||||| | | |||||||||||||||||||| ||||||||||||||    
T  29615028 gattgagtatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgtgtatgttctggattgtt 29615127  T
Q  275 tgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
     ||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  29615128 -gagttgcggagcagtaagtcatatgaaacatatgtaatagtcgagttgtatgtagatatacacaggtt 29615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 12167533 - 12167420
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  12167533 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 12167435  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  12167434 tagatatacacaggt 12167420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 19786753 - 19786866
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||  |||||||| |||||||||| ||||||| | |||||||||||||||    
T  19786753 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttatggagtagtaagtcatatgatacatatgtagtagtcgagttgtatg 19786851  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  19786852 tagatatacacaggt 19786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 19877626 - 19877513
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  19877626 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 19877528  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  19877527 tagatatacacaggt 19877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 19883402 - 19883289
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  19883402 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 19883304  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  19883303 tagatatacacaggt 19883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 19286442 - 19286329
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||| | ||||||| | | |||||||||||||    
T  19286442 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatattatacatatgtagtggtcgagttgtatg 19286344  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  19286343 tagatatacacaggt 19286329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 12167735 - 12167659
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  12167735 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgcttagtgcat 12167659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 19286644 - 19286568
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  19286644 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgcttagtgcat 19286568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 19877828 - 19877752
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  19877828 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgcttagtgcat 19877752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 19786552 - 19786621
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgctt 73  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||    
T  19786552 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgctt 19786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 34640672 - 34640733
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  34640672 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagccttttctgaac 34640733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 34647346 - 34647407
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  34647346 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagccttttctgaac 34647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 19883604 - 19883528
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||| |||||| ||||||    
T  19883604 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagccttttctgaactgttgcttagtgcat 19883528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 25470387 - 25470451
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaactt 67  Q
    ||||||||||||||||||| |||||||||||||||| || |||||||||||| ||||||||||||    
T  25470387 ggtcgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactt 25470451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18799886 - 18799832
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc 55  Q
    |||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  18799886 gccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagcc 18799832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 20008570 - 20008630
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    ||||||||||||||||||||||| |||||||||||  |||  |||| ||||||||||||||    
T  20008570 ggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagccttttctgaa 20008630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 11289537 - 11289598
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||| ||||||||||| || ||||||| | |||| ||||||||||||||||||||||||||    
T  11289537 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacaggtt 11289598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 21365161 - 21365222
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    |||||||||||||| ||||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  21365161 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 21365222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 23969143 - 23969204
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    |||||||||||||| ||||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  23969143 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 23969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 9099694 - 9099769
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcag-ccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| |||  |||||||||||||||  |||  |||||||| ||||||||||| ||||||||||||||    
T  9099694 ggtcgcttaagcgagctactcgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-ttttgcttcgtgca 9099769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 19300359 - 19300434
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| || ||||||||||||   |||||||||||||||| | ||||||| |||||||||||||    
T  19300359 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaac-tttgcttcgtgca 19300434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 29097297 - 29097222
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcag-ccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| |||  |||||||||||||||  |||  |||||||| ||||||||||| ||||||||||||||    
T  29097297 ggtcgcttaagcgagctactcgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-ttttgcttcgtgca 29097222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 10582794 - 10582828
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| |||||||||||||||||||||||||    
T  10582794 atatgcatttgtcgagttgtatgtagatatacaca 10582828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 18788578 - 18788544
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  18788578 atatgcattagttgagttgtatgtagatatacaca 18788544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 18799558 - 18799524
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  18799558 atatgcattagttgagttgtatgtagatatacaca 18799524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21565799 - 21565837
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  21565799 gccggtcgcttaagcgaactggacgtcgcttaagcgaag 21565837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 21566145 - 21566179
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  21566145 atatgcattagttgagttgtatgtagatatacaca 21566179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 24562501 - 24562463
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  24562501 atatgcatttgttgagttgtatgtagatatacacaggtt 24562463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 9099932 - 9099991
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 338  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  9099932 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 9099991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 29097059 - 29097000
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 338  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  29097059 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 29097000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 24513782 - 24513817
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24513782 acatatgcatt-gtcgagttgtatgtagatatacaca 24513817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 25396618 - 25396582
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||| | |||||||||||||||||||    
T  25396618 cggtcgcttaagcgagccagccgtcgcttaagcgaag 25396582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 31251593 - 31251557
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||||| || ||||||||||||||||||||||    
T  31251593 acatatgcatttgttgagttgtatgtagatatacaca 31251557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 343
Target Start/End: Complemental strand, 111213 - 110939
Alignment:
Q  77 gcattctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgt 176  Q
    |||||||| ||| | |||||||||| |||||| |||||| |||||| | |||||||| |||| ||||| |||||| | |||||||||||||||||| |||    
T  111213 gcattctataatttctcctttaactagtataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgt 111114  T
Q  177 tggagataattgagtaagaaatcaagtga--------atatataac-taatgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctg 267  Q
    ||||||| |||| ||| |||| |||||||        ||||||||| |   |||||  | ||||||| | || |||||||||||||||||||  ||||||    
T  111113 tggagatgattgtgtatgaaaacaagtgaatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctg 111014  T
Q  268 gattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||| | |||||| |||||||| |||||||||||| ||||| | |||| ||||||||||||||||||||||||||    
T  111013 gattg-tcgagttgtggagtagtaagtcatatgaaatatatgtaatagttgagttgtatgtagatatacacaggtt 110939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 111284 - 111243
Alignment:
Q  25 gtcgcttaagcgaagggagccttagtcagccttttctgaact 66  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagccttttctgaact 111243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 91824 - 91879
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||| ||||||||||||||||||||  |||  ||||| ||||||||    
T  91824 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttt 91879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 97550 - 97605
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||| ||||||||||||||||||||  |||  ||||| ||||||||    
T  97550 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttt 97605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 13742801 - 13742686
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||    
T  13742801 tgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgtggagtagtaagtcatatgaaacatatgtaatagtcgagttgtatg 13742702  T
Q  328 tagatatacacaggtt 343  Q
    | ||||||||||||||    
T  13742701 ttgatatacacaggtt 13742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 13006602 - 13006489
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||| | ||||||| | | |||||||||||||    
T  13006602 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatattatacatatgtagtggtcgagttgtatg 13006504  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  13006503 tagatatacacaggt 13006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13743083 - 13743006
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||    
T  13743083 gccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc--ttctgaacttttgtttcgtgcat 13743006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 13123853 - 13123967
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | |||||||||||||||||||||| ||||||| |||||  |||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  13123853 tgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttgtggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 13123951  T
Q  328 tagatatacacaggtt 343  Q
    ||||||||||||||||    
T  13123952 tagatatacacaggtt 13123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 13006804 - 13006728
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  13006804 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgcttagtgcat 13006728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 12710782 - 12710896
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | |||||||||||||||||||||| ||||||| |||||  |||||  |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  12710782 tgatgtatgtgcataattataaataattgtgtatgttctgaattgtc-gagttatggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 12710880  T
Q  328 tagatatacacaggtt 343  Q
    ||||||||||||||||    
T  12710881 tagatatacacaggtt 12710896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 12710528 - 12710604
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||||    
T  12710528 ggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagccttttctgaactattacttagtgcat 12710604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 13123599 - 13123675
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||||    
T  13123599 ggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagccttttctgaactattacttagtgcat 13123675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 12591327 - 12591382
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  12591327 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcgtttt 12591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14320251 - 14320309
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    ||||||||||||||||| ||| || |||||||||||||  |||||||||||||||||||    
T  14320251 gccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttt 14320309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 16090518 - 16090443
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||||||||||||||||||||  |||  |||||||||| ||||||||||  ||||||||||||    
T  16090518 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgca 16090443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13678899 - 13678861
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  13678899 gccggtcgcttaagcgaaccagccgtcgcttaagcgaag 13678861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16676760 - 16676722
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16676760 gccggtcgcttaagcgaactagtcgtcgcttaagcgaag 16676722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17650996 - 17650958
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  17650996 gccggtcgcttaagcgaactagtcgtcgcttaagcgaag 17650958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20311671 - 20311709
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20311671 gccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 11389958 - 11389994
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||| |||||||||||||||||||||    
T  11389958 cggtcgcttaagcgagctagccgtcgcttaagcgaag 11389994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 2464797 - 2464763
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaa 38  Q
    |||||||||||||| ||||||||||||||||||||    
T  2464797 ggtcgcttaagcgagctagccgtcgcttaagcgaa 2464763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 3858048 - 3858082
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaa 38  Q
    |||||||||||||| ||||||||||||||||||||    
T  3858048 ggtcgcttaagcgagctagccgtcgcttaagcgaa 3858082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 4280182 - 4280144
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  4280182 atatgcatttgttgagttgtatgtagatatacacaggtt 4280144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 11383472 - 11383506
Alignment:
Q  5 gtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||| |||||||||||||||||||||    
T  11383472 gtcgcttaagcgagctagccgtcgcttaagcgaag 11383506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 11383796 - 11383830
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  11383796 atatgcattagttgagttgtatgtagatatacaca 11383830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 11390284 - 11390318
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  11390284 atatgcattagttgagttgtatgtagatatacaca 11390318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 14169486 - 14169520
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| |||||||||||||||||||||||||    
T  14169486 atatgcatttgtcgagttgtatgtagatatacaca 14169520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 14178960 - 14178994
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| |||||||||||||||||||||||||    
T  14178960 atatgcatttgtcgagttgtatgtagatatacaca 14178994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 19616514 - 19616476
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  19616514 atatgcatttgttgagttgtatgtagatatacacaggtt 19616476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 20328206 - 20328240
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  20328206 atatgcattagttgagttgtatgtagatatacaca 20328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 12591570 - 12591631
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||| ||||||||||| || ||||||| | |||| ||||||||||||||||||||| ||||    
T  12591570 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacactggtt 12591631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 31154610 - 31154554
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| ||||||||||| |  ||||||||||| |||||||||||||||||||||||||    
T  31154610 ggagtggtgagtcatataagtacatatgcatt-gtcgagttgtatgtagatatacaca 31154554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 46625584 - 46625551
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcga 37  Q
    |||||||||||||||||| |||||||||||||||    
T  46625584 ggtcgcttaagcgaactacccgtcgcttaagcga 46625551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 29181731 - 29181806
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcag-ccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||||||||||||||||| ||  |||  |||||||| | ||||||||||  ||||||||||||    
T  29181731 ggtcgcttaagcgagctagccgtcgcttaagcaaactgagtgttagtcagtctttttctgaac-cttgcttcgtgca 29181806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 228 - 343
Target Start/End: Complemental strand, 23865730 - 23865615
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtca-tatgaaacatatgcattagtcgagttgtat 326  Q
    ||||||| | |||||||||||||||||||||| ||||||| |||||| ||||| ||||||||| ||||| ||||||| |||||||||||| |||||||||    
T  23865730 tgatgtatgtgcataattataaataattgtgtatgttctgaattgtt-gagttacggagtagtaagtcaatatgaaatatatgcattagttgagttgtat 23865632  T
Q  327 gtagatatacacaggtt 343  Q
    |||||||||||||||||    
T  23865631 gtagatatacacaggtt 23865615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 19902810 - 19902924
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | |||| ||||||||||||||||| |||||||||||||  |||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  19902810 tgatgtatgtgcatgattataaataattgtgtatgttctggattgtc-gagttgtggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 19902908  T
Q  328 tagatatacacaggtt 343  Q
    ||||||||||||||||    
T  19902909 tagatatacacaggtt 19902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 17053858 - 17053780
Alignment:
Q  264 tctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||||||||||||| ||||||||  ||||||||| ||||||| | | ||||||||||||||||||||||||||||    
T  17053858 tctggattgtttgagttgtggagtagtatgtcatatgatacatatgtagtggtcgagttgtatgtagatatacacaggt 17053780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 23865985 - 23865908
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| || ||| ||||||    
T  23865985 ggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgcat 23865908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24321293 - 24321353
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||||||  |||  |||| ||||||||||||||    
T  24321293 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagccttttctgaa 24321353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14057233 - 14057271
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14057233 gccggtcgcttaagcgagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 25111421 - 25111385
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||| ||||||||||||||||||    
T  25111421 cggtcgcttaagcgaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 18613654 - 18613619
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||| |||||||||||||||||||    
T  18613654 ggtcgcttaagcgaaccagccgtcgcttaagcgaag 18613619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 10607178 - 10607120
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcg-agttgtatgtagatatacaca 339  Q
    ||||| ||||||||||| || ||||||||||| |||| |||||||||||||||||||||    
T  10607178 ggagtggtgagtcatataaatacatatgcatttgtcggagttgtatgtagatatacaca 10607120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 19987991 - 19988045
Alignment:
Q  218 tgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattg 272  Q
    ||||||||| ||||||| | |||||||| ||| ||||||||| ||||||||||||    
T  19987991 tgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 23825343 - 23825305
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  23825343 atatgcatttgttgagttgtatgtagatatacacaggtt 23825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 25111061 - 25111027
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  25111061 atatgcattagttgagttgtatgtagatatacaca 25111027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 30766907 - 30766945
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  30766907 atatgcatttgttgagttgtatgtagatatacacaggtt 30766945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 19988110 - 19988178
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatgaaa-catatgcattagtcgagttgtatgtagatatacac 338  Q
    |||||||| ||||||||| || || ||||||||| |||||||||| ||  ||||||||||||||||||||    
T  19988110 ttgtttgaattgcggagttgtaagccatatgaaaacatatgcatt-gttaagttgtatgtagatatacac 19988178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 14057563 - 14057599
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||||| |||||||||||| |||||||||    
T  14057563 acatatgcattagttgagttgtatgtaaatatacaca 14057599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 25624680 - 25624715
Alignment:
Q  306 tatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25624680 tatgcatt-gtcgagttgtatgtagatatacacaggt 25624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 33089036 - 33089001
Alignment:
Q  306 tatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33089036 tatgcatt-gtcgagttgtatgtagatatacacaggt 33089001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 41009392 - 41009448
Alignment:
Q  283 ggagtagtgagtcatatgaaa-catatgcattagtcgagttgtatgtagatatacac 338  Q
    ||||| ||||||||||||||  ||||||||||  | |||||||||||||||||||||    
T  41009392 ggagtggtgagtcatatgaatgcatatgcattgttggagttgtatgtagatatacac 41009448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 174442 - 174557
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||| ||||| | ||||||| |||||||    
T  174442 tgatgtatgtgcataattataaataattgtgtatgttctggattgtttgagttgcggagcagtaagtcatttgaaaaatatgtaatagtcgaattgtatg 174541  T
Q  328 tagatatacacaggtt 343  Q
    |||| ||||| |||||    
T  174542 tagagatacaaaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 493650 - 493725
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| || |||||||||||||  ||||||||||||||| ||||||||||  ||||||||||||    
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaac-cttgcttcgtgca 493725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 525196 - 525160
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  525196 cggtcgcttaagcgaaccagccttcgcttaagcgaag 525160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 41111110 - 41110997
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||||||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  41111110 tgatgtatgtgcataattataaataattgtgtaagt-ctggattgtttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 41111012  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  41111011 tagatatacacaggt 41110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 41111312 - 41111236
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  41111312 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgcttagtgcat 41111236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 20851755 - 20851815
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||||||  |||  |||| ||||||||||||||    
T  20851755 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagccttttctgaa 20851815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 20858382 - 20858442
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||||||  |||  |||| ||||||||||||||    
T  20858382 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagccttttctgaa 20858442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 21705708 - 21705648
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||||||  |||  |||| ||||||||||||||    
T  21705708 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagccttttctgaa 21705648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 18712182 - 18712106
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||   || ||||||||||| |||||||    
T  18712182 ggtcgcttaagcgaactagccgtcgcttaagcgaagatgaccttagtcagccaccttttgaacttttgcctcgtgca 18712106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 20941658 - 20941714
Alignment:
Q  218 tgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  20941658 tgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 21710251 - 21710196
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  21710251 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttt 21710196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 20941777 - 20941846
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||| ||||||||| || ||||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  20941777 ttgtttgaattgcggagttgtaagtcatatgaaaacatatgcatt-gttaagttgtatgtagatatacaca 20941846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 19664085 - 19664121
Alignment:
Q  303 acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19664085 acatatgcattagttgagttgtatgtagatatacaca 19664121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 19961622 - 19961547
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| || ||||||||||||   |||||||||||||||| | ||||||| |||||||||||||    
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaac-tttgcttcgtgca 19961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 20824280 - 20824349
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||| |||||| || |||||||||||| ||||||||||| | ||  |||||||||||||||||||||    
T  20824280 ttgtttgaattgcggtgttgtgagtcatatgaaaacatatgcaat-gttaagttgtatgtagatatacaca 20824349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 21542275 - 21542237
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  21542275 atatgcatttgttgagttgtatgtagatatacacaggtt 21542237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 42095861 - 42095899
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  42095861 atatgcatttgttgagttgtatgtagatatacacaggtt 42095899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 20045382 - 20045414
Alignment:
Q  5 gtcgcttaagcgaactagccgtcgcttaagcga 37  Q
    ||||||||||||||||| |||||||||||||||    
T  20045382 gtcgcttaagcgaactacccgtcgcttaagcga 20045414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 21734429 - 21734464
Alignment:
Q  306 tatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21734429 tatgcatt-gtcgagttgtatgtagatatacacaggt 21734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 21986921 - 21986956
Alignment:
Q  306 tatgcattagtcgagttgtatgtagatatacacaggt 342  Q
    |||||||| ||||||||||||||||||||||||||||    
T  21986921 tatgcatt-gtcgagttgtatgtagatatacacaggt 21986956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 257 - 153
Alignment:
Q  238 gcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatataca 337  Q
    |||||||||||||||||||||| |||||||||||||| ||| || |||||||| |||||||||||| ||||| | |||| ||||||||||||||||||||    
T  257 gcataattataaataattgtgtatgttctggattgtt-gagctgtggagtagtaagtcatatgaaatatatgtaatagttgagttgtatgtagatataca 159  T
Q  338 caggtt 343  Q
    ||||||    
T  158 caggtt 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 551 - 475
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||||    
T  551 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagccttttctgaactattacttagtgcat 475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 442 - 324
Alignment:
Q  94 ctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttggagataattgagtaa 193  Q
    |||||||| |||||| | |||| |||||| |||||||||| |||| |||||  ||||| | |||||||||||||||||| |||||||||| || | |||     
T  442 ctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaagccagtgattggattgattggtgttagtaaatgttggagatgatggtgtat 343  T
Q  194 gaaatcaagtgaatatata 212  Q
    |||| ||||||||||||||    
T  342 gaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 23527745 - 23527632
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | ||||||||||||||||||||||  || ||||||| ||||||||| |||||||| |||||||||| ||||||| | | |||||||||||||    
T  23527745 tgatgtatgtgcataattataaataattgtgtcagt-ctggattatttgagttgtggagtagtaagtcatatgatacatatgtagtggtcgagttgtatg 23527647  T
Q  328 tagatatacacaggt 342  Q
    |||||||||||||||    
T  23527646 tagatatacacaggt 23527632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 23528002 - 23527926
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||    
T  23528002 ggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagccttttctgaactgttgcttagtgcat 23527926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 22460589 - 22460529
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||||||  |||  |||| ||||||||||||||    
T  22460589 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagccttttctgaa 22460529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 19236333 - 19236273
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    |||||||||||||||||||||||||||||||||||  |||  ||||  |||||||||||||    
T  19236333 ggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagatagccttttctgaa 19236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 34829516 - 34829441
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| || |||||||||||||  |||||||||||| || |||||||||| |||||||||||||    
T  34829516 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaac-tttgcttcgtgca 34829441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18408561 - 18408598
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaa 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  18408561 gccggtcgcttaagcaaactagccgtcgcttaagcgaa 18408598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 20772403 - 20772328
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcag-ccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| ||||||||||||||||  |||  |||||||| |||||||||||  |||||||||||||    
T  20772403 ggtcgcttaagcgagctacccgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-atttgcttcgtgca 20772328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 20781178 - 20781103
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| ||||||||||||||||   ||  |||||||||| ||||||||| ||||||||||||||    
T  20781178 ggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgca 20781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 22232437 - 22232493
Alignment:
Q  218 tgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||||||| ||||||| | |||||||||||| |||| |||| ||||||||||||||    
T  22232437 tgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 22467213 - 22467153
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaa 64  Q
    ||||| ||||||||||||||||||||||||||| |  |||  |||| ||||||||||||||    
T  22467213 ggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagccttttctgaa 22467153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 24930551 - 24930626
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcag-ccttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| |||  |||||||||||||||  |||  |||||||| ||||||||||| ||||||||||||||    
T  24930551 ggtcgcttaagcgagctactcgtcgcttaagcgaactgagtgttagtcagcccttttctgaa-ttttgcttcgtgca 24930626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 1857461 - 1857499
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  1857461 atatgcatttgttgagttgtatgtagatatacacaggtt 1857499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 21675429 - 21675467
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  21675429 atatgcatttgttgagttgtatgtagatatacacaggtt 21675467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 22232556 - 22232625
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatgaaa-catatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| || ||||||||| || |||||||||||| |||||||||| ||  |||||||||||||||||||||    
T  22232556 ttgttcgaattgcggagtcgtaagtcatatgaaaacatatgcatt-gttaagttgtatgtagatatacaca 22232625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 23112694 - 23112728
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  23112694 atatgcattagttgagttgtatgtagatatacaca 23112728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 23527893 - 23527803
Alignment:
Q  94 ctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaat-tgattggtgttagtaattgttggagat 183  Q
    |||||||| |||||| |||||| |||||| || ||||||| |||| ||| | |||| | | || |||||||||||||||| ||||||||||    
T  23527893 ctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgttagtaaatgttggagat 23527803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 24930789 - 24930848
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcg---agttgtatgtagatatacac 338  Q
    ||||| |||||||||||||  ||||||||||||||||   ||||||||||||||||||||    
T  24930789 ggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 24930848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 28890019 - 28890080
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    ||||||||||||||  |||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  28890019 ggtcgcttaagcgagatagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 28890080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 28896723 - 28896784
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    ||||||||||||||  |||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  28896723 ggtcgcttaagcgagatagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 28896784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 28909971 - 28910032
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    ||||||||||||||  |||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  28909971 ggtcgcttaagcgagatagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 28910032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 28931663 - 28931724
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    ||||||||||||||  |||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  28931663 ggtcgcttaagcgagatagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 28931724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 28946366 - 28946427
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    ||||||||||||||  |||||||||||||||||||  |||  ||||| ||| ||||||||||    
T  28946366 ggtcgcttaagcgagatagccgtcgcttaagcgaactgagtgttagttagctttttctgaac 28946427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 34829273 - 34829216
Alignment:
Q  283 ggagtagtgagtcatatgaaacatatgcattagtcga-gttgtatgtagatatacaca 339  Q
    ||||| ||||||||||| | ||||||||||| || || ||||||||||||||||||||    
T  34829273 ggagtggtgagtcatataatacatatgcatttgttgaagttgtatgtagatatacaca 34829216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 22439683 - 22439715
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatataca 337  Q
    |||||||||||| ||||||||||||||||||||    
T  22439683 atatgcattagttgagttgtatgtagatataca 22439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 8046626 - 8046744
Alignment:
Q  94 ctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagtaattgttggagataattgagtaa 193  Q
    |||||||| |||||| |||||| |||||| |||||||||| |||| ||||| || ||| | |||||||||||||||||| |||||||||| |||| |||     
T  8046626 ctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgttagtaaatgttggagatgattgtgtat 8046725  T
Q  194 gaaatcaagtgaatatata 212  Q
    |||| ||||||||||||||    
T  8046726 gaaaacaagtgaatatata 8046744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 8046789 - 8046893
Alignment:
Q  238 gcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatataca 337  Q
    |||||||||||||||||||||| || | ||||||  | |||||| |||||||| |||||||||||| ||||| | |||||||||||||||||||||||||    
T  8046789 gcataattataaataattgtgtatgatttggattact-gagttgtggagtagtaagtcatatgaaatatatgtaatagtcgagttgtatgtagatataca 8046887  T
Q  338 caggtt 343  Q
    ||||||    
T  8046888 caggtt 8046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 53483074 - 53483013
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaac 65  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  53483074 ggtcgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagccttttctgaac 53483013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 8046516 - 8046593
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||||| || ||| ||||||    
T  8046516 ggtcgcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcat 8046593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 11847537 - 11847472
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttt 68  Q
    |||||||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||||||    
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaacttt 11847472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 14555882 - 14555938
Alignment:
Q  218 tgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||    
T  14555882 tgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14486106 - 14486052
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc 55  Q
    ||||||||||||||||| | |||| |||||||||||||| |||||||||||||||    
T  14486106 gccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtcagcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 16147453 - 16147528
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||||||||||||||||||||  |||  |||||||||| ||||||||||  ||||||||||||    
T  16147453 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgca 16147528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 14556001 - 14556070
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||| ||||||||| || ||||||||| |||||||||||||| |  |||||||||||||||||||||    
T  14556001 ttgtttgaattgcggagttgtaagtcatatgaaaacatatgcatta-ttaagttgtatgtagatatacaca 14556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15407523 - 15407485
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  15407523 gccggtcgcttaagcgaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 1650990 - 1651047
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| ||||||||||| |  |||||||||||||| |||||||| |||||||||||||    
T  1650990 ggagtggtgagtcatataagtacatatgcattagtggagttgtaagtagatatacaca 1651047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 15407154 - 15407097
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| ||||||||||| || |||||||||||  | ||||||||||||||||||||||    
T  15407154 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacaca 15407097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 15325118 - 15325062
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacac 338  Q
    ||||| ||||||||||| || |||||||||||  | |||||||||||||||||||||    
T  15325118 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacac 15325062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 27905695 - 27905620
Alignment:
Q  6 tcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgcatt 81  Q
    |||||||||||| ||| || ||||||||||||   |||||| ||||||||  |||||||| ||||||||||||||||    
T  27905695 tcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcatt 27905620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 9514 - 9628
Alignment:
Q  228 tgatgtaagcgcataattataaataattgtgtttgttctggattgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatg 327  Q
    ||||||| | |||| ||||||||||||||| | |||||||||||||  |||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  9514 tgatgtatgtgcatgattataaataattgtatatgttctggattgtc-gagttgtggagtattaagtcatatgaaatatatgtagtagttgagttgtatg 9612  T
Q  328 tagatatacacaggtt 343  Q
    ||||||||||||||||    
T  9613 tagatatacacaggtt 9628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 9260 - 9336
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgcat 80  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| ||||||    
T  9260 ggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagccttttctaaacttttacttagtgcat 9336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 336 - 243
Alignment:
Q  77 gcattctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagt 170  Q
    ||||||||||||||||| || ||||||||||| | | ||||||||||| ||||||||||||| || |||||||||||||||| ||| |||||||    
T  336 gcattctaaaatatttctttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagt 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 7481 - 7388
Alignment:
Q  77 gcattctaaaatatttcctttaacttgtataatcctggtataggtatccgaatcctactagatcaagctggtgatcgaattgattggtgttagt 170  Q
    ||||||||||||||||| || ||||||||||| | | ||||||||||| ||||||||||||| || |||||||||||||||| ||| |||||||    
T  7481 gcattctaaaatatttctttcaacttgtataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagt 7388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 407 - 353
Alignment:
Q  25 gtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||| || ||||||||||||| |||||||| ||||||||||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaa-ttttgcttcgtgca 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 7552 - 7498
Alignment:
Q  25 gtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||| || ||||||||||||| |||||||| ||||||||||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaa-ttttgcttcgtgca 7498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 660 - 627
Alignment:
Q  5 gtcgcttaagcgaactagccgtcgcttaagcgaa 38  Q
    |||||||||||||| |||||||||||||||||||    
T  660 gtcgcttaagcgaagtagccgtcgcttaagcgaa 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 7805 - 7772
Alignment:
Q  5 gtcgcttaagcgaactagccgtcgcttaagcgaa 38  Q
    |||||||||||||| |||||||||||||||||||    
T  7805 gtcgcttaagcgaagtagccgtcgcttaagcgaa 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 4294 - 4368
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||||||||| |||||||||||||  |||| ||||||||||||||||||| | ||||||||||||    
T  4294 ggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagccttttctgaa-tcttgcttcgtgca 4368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15067 - 15121
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc 55  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  15067 gccggtcgcttaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 15414 - 15448
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  15414 atatgcattagttgagttgtatgtagatatacaca 15448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 7568 - 7667
Alignment:
Q  176 ttggagataattgagtaagaaatcaagtgaatatata-actaatgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    |||||||| |||||||| |||||||||||||||||||   |  ||||||||| ||||||| | |||||||||||| |||||| || |||||||| |||||    
T  7568 ttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaatgaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 7730 - 7798
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| || ||||||||| |  |||||||||||||||||||||| ||  |||||||||||||||||||||    
T  7730 ttgttggaattgcggagttgcaagtcatatgaaacatatgcatt-gttaagttgtatgtagatatacaca 7798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30336 - 30258
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||||| | | || |||||||||||||| |||||||||||||||  |||||||| ||||||||||||||    
T  30336 gccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttctgaa-ttttgcttcgtgca 30258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 666 - 704
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  666 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 7605 - 7640
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaag 7640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 80113 - 80188
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||||||||||||||||||||  |||  |||||||||| ||||||||||  ||||||||||||    
T  80113 ggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaac-cttgcttcgtgca 80188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 81835 - 81887
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc 55  Q
    ||||||||||||||| | |||||||||||||||||||   | |||||||||||    
T  81835 cggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagcc 81887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 116302 - 116234
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttt 68  Q
    ||||||||||||||||||| |||||||||||||||||||    |||||||||||| |||| ||||||||    
T  116302 gccggtcgcttaagcgaaccagccgtcgcttaagcgaagatgaccttagtcagccattttttgaacttt 116234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 129255 - 129333
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||||| | |||||||||||||||||||   | |||||||||||  ||| |||| ||||||||||||||    
T  129255 gccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttagtcagccactttttgaa-ttttgcttcgtgca 129333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1254 - 1176
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||||| | ||||||||||||||||||| | | |||||||||||  ||| |||| ||||||||||||||    
T  1254 gccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgca 1176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17603 - 17525
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||||| | |||| |||||||||||||| ||||||| |||||||  |||||||| ||||| ||||||||    
T  17603 gccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccactttctgaa-ttttgtttcgtgca 17525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3911 - 3949
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3911 gccggtcgcttaagcgaactagacgtcgcttaagcgaag 3949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 4257 - 4291
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  4257 atatgcattagttgagttgtatgtagatatacaca 4291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 1647 - 1716
Alignment:
Q  270 ttgtttgagttgcggagtagtgagtcatatg-aaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||| ||||||||| || ||||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  1647 ttgtttgaattgcggagttgtaagtcatatgaaaacatatgcatt-gttaagttgtatgtagatatacaca 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 1528 - 1584
Alignment:
Q  218 tgaatgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||||||| ||||||| | |||||||| ||| ||||||||| ||||||||||||||    
T  1528 tgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 792 - 754
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  792 gccggtcgcttaagcgaaccagccgtcgcttaagcgaag 754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6945 - 6907
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6945 gccggtcgcttaagcgagctagccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10747 - 10709
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  10747 gccggtcgcttaagcgagctagccgtcgcttaagcgaag 10709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34946 - 34984
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34946 gccggtcgcttaagcgaactagccatcgcttaagcgaag 34984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 36775 - 36809
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  36775 atatgcattagttgagttgtatgtagatatacaca 36809  T

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Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 11631 - 11696
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttt 68  Q
    |||||||||||||||||| || ||||||||||||   |||||||||||||||| | ||||||||||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaacttt 11696  T

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Target: scaffold0453 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 11174 - 11249
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||  || || |||||||||||||  ||||||||||||||| ||||||||||  ||||||||||||    
T  11174 ggtcgcttaagcgagatacccttcgcttaagcgaactgagccttagtcagcctttttctgaac-cttgcttcgtgca 11249  T

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Target: scaffold0261 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 24192 - 24267
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcct-tttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| || ||||||||||||   ||||||||||||| || ||||||||| |||||||||||||    
T  24192 ggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaac-tttgcttcgtgca 24267  T

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Target: scaffold0206 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 18121 - 18046
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgca 79  Q
    |||||||||||||| ||| |  |||||||||||||  ||||||||||||||| ||||||||||  ||||||||||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaac-cttgcttcgtgca 18046  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 28106 - 28050
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacac 338  Q
    ||||| |||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  28106 ggagtggtgagtcatatgaatacatatgcattgttggagttgtatgtagatatacac 28050  T

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Target: scaffold0077 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  222 tgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

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Target: scaffold0077; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  222 tgaaaatgatgtaagcgcataattataaataattgtgtttgttctggattgtt 274  Q
    ||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

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Target: scaffold0077; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 4234 - 4267
Alignment:
Q  6 tcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| ||||||||||||||||    
T  4234 tcgcttaagcgaactagacgtcgcttaagcgaag 4267  T

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Target: scaffold0077; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 4576 - 4608
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatataca 337  Q
    |||||||||||| ||||||||||||||||||||    
T  4576 atatgcattagttgagttgtatgtagatataca 4608  T

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Target: scaffold0720 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 3882 - 3937
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcctttt 59  Q
    |||||||||||||| ||| || |||||||||||||  |||| ||||||||||||||    
T  3882 ggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtcagcctttt 3937  T

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Target: scaffold1853 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1853
Description:

Target: scaffold1853; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 732 - 793
Alignment:
Q  277 agttgcggagtagtgagtcatatgaaacatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||||| || |||||||| | |||||||||||  | ||||||||||||||||||||||    
T  732 agttgcggagttgtaagtcatattatacatatgcattctt-gagttgtatgtagatatacaca 793  T

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Target: scaffold1427 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 1059 - 1025
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  1059 atatgcattagttgagttgtatgtagatatacaca 1025  T

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Target: scaffold1299 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1299
Description:

Target: scaffold1299; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 125 - 159
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  125 atatgcattagttgagttgtatgtagatatacaca 159  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 8698 - 8664
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| |||||||||||||||||||||||||    
T  8698 atatgcatttgtcgagttgtatgtagatatacaca 8664  T

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Target: scaffold0301 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 3431 - 3397
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| |||||||||||||||||||||||||    
T  3431 atatgcatttgtcgagttgtatgtagatatacaca 3397  T

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Target: scaffold0222 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16207 - 16169
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  16207 gccggtcgcttaagcgagctaaccgtcgcttaagcgaag 16169  T

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Target: scaffold0107 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41198 - 41236
Alignment:
Q  1 gccggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  41198 gccgatcgcttaagcgaactagacgtcgcttaagcgaag 41236  T

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Target: scaffold0107; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 41574 - 41608
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  41574 atatgcattagttgagttgtatgtagatatacaca 41608  T

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Target: scaffold0106 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 38620 - 38582
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  38620 atatgcatttgttgagttgtatgtagatatacacaggtt 38582  T

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Target: scaffold0106; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 46688 - 46748
Alignment:
Q  279 ttgcggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| || ||||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  46688 ttgcggagttgtaagtcatatgaacatatatgcatt-gtcaagttgtatgtagatatacaca 46748  T

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Target: scaffold0106; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 50961 - 51021
Alignment:
Q  279 ttgcggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| || ||||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  50961 ttgcggagttgtaagtcatatgaacatatatgcatt-gtcaagttgtatgtagatatacaca 51021  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 17383 - 17417
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||||||| |||||||||||||||||||||||||    
T  17383 atatgcatttgtcgagttgtatgtagatatacaca 17417  T

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Target: scaffold0076 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 30103 - 30141
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  30103 atatgcatttgttgagttgtatgtagatatacacaggtt 30141  T

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Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 35504 - 35542
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  35504 atatgcatttgttgagttgtatgtagatatacacaggtt 35542  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 72715 - 72638
Alignment:
Q  4 ggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagcc-ttttctgaacttttgcttcgtgcatt 81  Q
    |||||||||||||| ||| || ||||||||||||   ||||| |||||||||  |||||||| ||||||||||||||||    
T  72715 ggtcgcttaagcgagctacccttcgcttaagcgagctgagcc-tagtcagccactttctgaatttttgcttcgtgcatt 72638  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 46937 - 46975
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  46937 atatgcatttgttgagttgtatgtagatatacacaggtt 46975  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 134882 - 134829
Alignment:
Q  25 gtcgcttaagcgaagggagccttagtcagccttttctgaacttttgcttcgtgca 79  Q
    ||||||||||||||  |||| ||||||||||||||||||| | ||||||||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagccttttctgaa-tcttgcttcgtgca 134829  T

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Target: scaffold0023; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 153275 - 153332
Alignment:
Q  283 ggagtagtgagtcatatgaa-acatatgcattagtcgagttgtatgtagatatacaca 339  Q
    ||||| ||||||||||| || |||||||||||  | ||||||||||||||||||||||    
T  153275 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacaca 153332  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 174519 - 174557
Alignment:
Q  305 atatgcattagtcgagttgtatgtagatatacacaggtt 343  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  174519 atatgcatttgttgagttgtatgtagatatacacaggtt 174557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 15609 - 15674
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaagggagccttagtcagccttttctgaacttt 68  Q
    ||||||||||||||||| | |||||||||||||||||    ||||||||||||  || ||||||||    
T  15609 cggtcgcttaagcgaaccaaccgtcgcttaagcgaagatgaccttagtcagccacttttgaacttt 15674  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 102539 - 102575
Alignment:
Q  3 cggtcgcttaagcgaactagccgtcgcttaagcgaag 39  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  102539 cggtcgcttaagcgaaccagccatcgcttaagcgaag 102575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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