View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_high_37 (Length: 345)
Name: NF18153_high_37
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33643850 - 33643526
Alignment:
| Q |
1 |
ataaatgcagctgacatggtggttccaacatgagattttgatgtgtatctcacataaatatggtttttcaaatggataacgtgaggattatggattgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33643850 |
ataaatgcagctgacatggtggttccaacatgagattttgatgtatatctcacataaatatggtttttcaaatggataacgtgaggattatggattgtgt |
33643751 |
T |
|
| Q |
101 |
atccctcttcccttcttcaattgatcctttccctcagcatttatggagcaaagaacataaatgagcatgaggctacacatccaatatgcattcaatgtgg |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33643750 |
atccctcttcccttcttcaat---tcctttccctcagcatttatggagcaaagaacataaatgagcatgaggctacacatccaatatgcattcaatgtgg |
33643654 |
T |
|
| Q |
201 |
atgtaaatgtactagaggtagtagtagatttaagcaatgccattattaaagtttggagagtggtcaatagttgggtggttggaacttggaagtaaagtaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33643653 |
atgtaaatgtactagag---gtagtagatttaagcaatgccattattaaagtttggagagtggtcaatagttgggtggttggaacttggaagtaaagtaa |
33643557 |
T |
|
| Q |
301 |
ctcacaccactggaaatatttgcaagttttt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33643556 |
ctcacaccactggaaatatttgcaagttttt |
33643526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University