View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_41 (Length: 324)

Name: NF18153_high_41
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_41
NF18153_high_41
[»] chr1 (1 HSPs)
chr1 (15-307)||(35127721-35128013)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 35128013 - 35127721
Alignment:
Q  15 catcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccattgtactggatgacatcgttggcatcacttga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128013 catcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccattgtactggatgacatcgttggcatcacttga 35127914  T
Q  115 atgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatgacactttcctcgctaacatcaaccatttcattgtct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  35127913 atgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatcacactttcctcactaacatcaaccatttcattgtct 35127814  T
Q  215 ctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccctgtccttgataa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127813 ctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccctgtccttgataa 35127721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University