View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_46 (Length: 293)

Name: NF18153_high_46
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_46
NF18153_high_46
[»] chr2 (2 HSPs)
chr2 (108-277)||(12106892-12107060)
chr2 (6-56)||(12106792-12106842)
[»] chr1 (5 HSPs)
chr1 (126-201)||(31481289-31481363)
chr1 (127-201)||(26759629-26759702)
chr1 (139-201)||(26924847-26924908)
chr1 (167-197)||(33324286-33324316)
chr1 (153-198)||(18650185-18650230)
[»] chr7 (3 HSPs)
chr7 (127-188)||(5907290-5907351)
chr7 (136-194)||(36390185-36390245)
chr7 (126-198)||(20117975-20118048)
[»] chr3 (3 HSPs)
chr3 (134-201)||(9858282-9858350)
chr3 (126-198)||(28421477-28421549)
chr3 (154-198)||(47005583-47005627)
[»] chr4 (3 HSPs)
chr4 (116-173)||(51267687-51267744)
chr4 (126-198)||(21081823-21081894)
chr4 (154-201)||(44206741-44206789)
[»] chr5 (1 HSPs)
chr5 (126-198)||(12567156-12567228)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 108 - 277
Target Start/End: Original strand, 12106892 - 12107060
Alignment:
Q  108 acaaagacgggggcatgcgacctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctattcttcacnn 207  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||       
T  12106892 acaaagacggaggcatgcgacctgacccaggaataatcaaattggaaatacattgtgagaaaacagtccaaatggatcaactctaatctattcttca-aa 12106990  T
Q  208 nnnnnnnnncactaatcacagatgcatgcaaatcccacaagtgcaaatcagggatacaaacatgtttttt 277  Q
             ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12106991 aaaaaaaaacaccaatcacatgtgcatgcaaatcccacaagtgcaaatcagggatacaaacatgtttttt 12107060  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 12106792 - 12106842
Alignment:
Q  6 catagggctcacaatgacgtcgactcgtcaaattggcgtatatgtgttgag 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12106792 catagggctcacaatgacgtcgactcgtcaaattggcgtatatgtgttgag 12106842  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 31481289 - 31481363
Alignment:
Q  126 gacctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctattct 201  Q
    |||||||||||||||||||| |   | | ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  31481289 gacctgacccaggaataacccagacggagatacatcgtgataaaa-agtccaaatggatcaactctaatctattct 31481363  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 26759702 - 26759629
Alignment:
Q  127 acctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctattct 201  Q
    |||||||  |||||||||| || |||||||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  26759702 acctgacttaggaataacccaaatgaaaatacatcgtgataaatcagtcc-aatggatctactctaatctattct 26759629  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 26924847 - 26924908
Alignment:
Q  139 aataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctattct 201  Q
    ||||||| || |||||||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  26924847 aataacccaaatgaaaatacatcgtgataaatcagtcc-aatggatctactctaatctattct 26924908  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 33324316 - 33324286
Alignment:
Q  167 aaaacagtccaaatggatcaactctaatcta 197  Q
    |||||||||||||||||||||||||||||||    
T  33324316 aaaacagtccaaatggatcaactctaatcta 33324286  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 18650185 - 18650230
Alignment:
Q  153 aaatacatcgtgaaaaaacagtccaaatggatcaactctaatctat 198  Q
    ||||||||||||||||| |||||||| |||||| ||||||| ||||    
T  18650185 aaatacatcgtgaaaaatcagtccaagtggatccactctaacctat 18650230  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 5907351 - 5907290
Alignment:
Q  127 acctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaac 188  Q
    |||||||| |||||||| | ||  | ||||||||||||| ||||||||||||||||||||||    
T  5907351 acctgacctaggaataatccaaaaggaaatacatcgtgataaaacagtccaaatggatcaac 5907290  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 36390245 - 36390185
Alignment:
Q  136 aggaataac-caaattgaaaatacatcgtgaaaaaa-cagtccaaatggatcaactctaat 194  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||| |||| ||||||||||    
T  36390245 aggaataactcaaatggaaaatacatcgtgaaaaaaacagtccaagtggaacaactctaat 36390185  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 20117975 - 20118048
Alignment:
Q  126 gacctgacccaggaataaccaaattgaaaataca-tcgtgaaaaaacagtccaaatggatcaactctaatctat 198  Q
    ||||||||  |||||||||| || || ||||||| |||||| ||| || ||||| |||||||||||||||||||    
T  20117975 gacctgacttaggaataacccaaatggaaatacaatcgtgataaatcaatccaagtggatcaactctaatctat 20118048  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 9858350 - 9858282
Alignment:
Q  134 ccaggaataaccaaattgaaaatacatcgtgaaaaaacagtc-caaatggatcaactctaatctattct 201  Q
    |||||||||||| || |||||||||| | ||| |||||||||  |||||||||||||||||| ||||||    
T  9858350 ccaggaataacccaactgaaaatacaacatgagaaaacagtctaaaatggatcaactctaatttattct 9858282  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 28421549 - 28421477
Alignment:
Q  126 gacctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctat 198  Q
    ||||||||| |||||||||  ||  | ||||||| ||||| |||||||||||| |||||| ||||||||||||    
T  28421549 gacctgacctaggaataactcaagcggaaatacaacgtgataaaacagtccaagtggatctactctaatctat 28421477  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 47005583 - 47005627
Alignment:
Q  154 aatacatcgtgaaaaaacagtccaaatggatcaactctaatctat 198  Q
    |||||||||||| ||| |||||||| |||||| ||||||||||||    
T  47005583 aatacatcgtgataaagcagtccaagtggatctactctaatctat 47005627  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 51267744 - 51267687
Alignment:
Q  116 gggggcatgcgacctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacag 173  Q
    ||||||||  |||||||||||| ||||||| |||||  |||||||||||| |||||||    
T  51267744 gggggcattagacctgacccagaaataacccaattgggaatacatcgtgataaaacag 51267687  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 21081894 - 21081823
Alignment:
Q  126 gacctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctat 198  Q
    |||||||||||||||||| ||||     |||||||||||||| || |||| || |||||||||||||||||||    
T  21081894 gacctgacccaggaataatcaaacgaggaatacatcgtgaaagaagagtctaa-tggatcaactctaatctat 21081823  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 44206741 - 44206789
Alignment:
Q  154 aatacatcgtgaaaaaacagtccaaa-tggatcaactctaatctattct 201  Q
    |||||||||||| |||| |||||||| |||||| |||||||||||||||    
T  44206741 aatacatcgtgagaaaatagtccaaaatggatcgactctaatctattct 44206789  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 12567228 - 12567156
Alignment:
Q  126 gacctgacccaggaataaccaaattgaaaatacatcgtgaaaaaacagtccaaatggatcaactctaatctat 198  Q
    ||||||| |||||||||||| ||  | ||||||| ||||| ||||| |||||| |||  ||||||||||||||    
T  12567228 gacctgatccaggaataaccgaaacggaaatacaacgtgataaaactgtccaagtggtacaactctaatctat 12567156  T

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