View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_51 (Length: 253)
Name: NF18153_high_51
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 49545996 - 49545771
Alignment:
| Q |
18 |
ctatacactacttatttagttattcatctagaacagtataaataaatattcaggtgatcacaattcaccagccataattgatgctaatagtaagatatct |
117 |
Q |
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| T |
49545996 |
ctatacactacttatttagttattcatctagaacagtataaataaatattcaggtgatcacaattcaccagccataattgatgctaatagtaagatatct |
49545897 |
T |
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| Q |
118 |
cttaaagacggttcagattattttgactaagagccaagaggagtagcttcaggatccattctatgaatgtgctaccttttccttgtctccacaagcttca |
217 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545896 |
cttaaagacggttcagattattttgact-------aagacgagtagcttcaggatccattctatgaatgtgctaccttttccttgtctccacaagcttca |
49545804 |
T |
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| Q |
218 |
cctgacgttttagtttttaccctttgcttctgc |
250 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
49545803 |
cctgacgttttagtttttaccccttgcttctgc |
49545771 |
T |
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