View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_55 (Length: 245)
Name: NF18153_high_55
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 14434908 - 14435111
Alignment:
| Q |
24 |
tgcagatgatgaagttgaaccgtggaagcatcttccttatagcttttctactatcaacattaacatctcttcaatcttcatcatcatcgtcttcagaaga |
123 |
Q |
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| T |
14434908 |
tgcagatgatgaagttgaaccgtggaagcatcttccttatagcttttctactatcaacattaacatctcttcaatcttcatcatcatcgtcttcagaaga |
14435007 |
T |
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| Q |
124 |
atcaaacatcatttcccgtttccaacaatacatacaaatcaaaaccaaccatccaaccccaaactacactcaatcctcccaatttctaatatcactatcc |
223 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14435008 |
atcaaacatcatttcccgtttccaacaatacctacaaatcaaaaccaaccatccaaccccaaactacactcaatcctcccaatttctaatatcactatcc |
14435107 |
T |
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| Q |
224 |
aaat |
227 |
Q |
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|||| |
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| T |
14435108 |
aaat |
14435111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 14405408 - 14405492
Alignment:
| Q |
114 |
cttcagaagaatcaaacatcatttcccgtttccaacaatacatacaaatcaaaaccaaccatccaaccccaaactacactcaatc |
198 |
Q |
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||||||||||||||||||| || || ||||||||||||||| |||||| || ||| |||||||||| ||||||||||||||||| |
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| T |
14405408 |
cttcagaagaatcaaacataatatcacgtttccaacaatacctacaaaccagaacagaccatccaacaccaaactacactcaatc |
14405492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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