View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_59 (Length: 237)
Name: NF18153_high_59
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36754141 - 36753921
Alignment:
| Q |
1 |
tgttttccaaatagattaaattgcaattgattacttgattgaaatttgtagcatgtacaacctttgattcaattacaacttgttcatcaaggacttcaat |
100 |
Q |
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| T |
36754141 |
tgttttccaaatagattaaattgcaattgattacttgattgaaatttgtagcatgtacaacctttgattcaattacaacttgttcatcaaggacttcaat |
36754042 |
T |
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| Q |
101 |
gaatatattgacctccgatttgaagtccatgatgtgatatatcacattgttggccaaataaagacatatggttcctgcaatcctctccattaagtcgtcc |
200 |
Q |
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| T |
36754041 |
gaatatattgacctccgatttgaagtccatgatgtgatatatcacattgttggccaaataaagacatatggttcctgcaatcctctccattaagtcgtcc |
36753942 |
T |
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| Q |
201 |
aatacaatttatctatgttat |
221 |
Q |
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| T |
36753941 |
aatacaatttatctatgttat |
36753921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 36767146 - 36767074
Alignment:
| Q |
34 |
cttgattgaaatttgtagcatgtacaacctttgattcaattacaacttgttcatcaaggacttcaatgaatat |
106 |
Q |
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| T |
36767146 |
cttgattgaaatttgtagcatgtacaacttttgattcacctacgatttgttcataaatgacttcgacgaatat |
36767074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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