View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_high_63 (Length: 211)
Name: NF18153_high_63
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_63 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1878124 - 1877920
Alignment:
| Q |
1 |
cccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggac |
100 |
Q |
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| T |
1878124 |
cccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggac |
1878025 |
T |
|
| Q |
101 |
catcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaatatatggtatatgttcttaatga |
200 |
Q |
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| T |
1878024 |
catcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaatatatggtatatgttcttaatga |
1877925 |
T |
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| Q |
201 |
tgatg |
205 |
Q |
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||||| |
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| T |
1877924 |
tgatg |
1877920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1884136 - 1883959
Alignment:
| Q |
1 |
cccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggac |
100 |
Q |
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| T |
1884136 |
cccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaatccatgtaaaaggac |
1884037 |
T |
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| Q |
101 |
catcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaaattcagaat |
178 |
Q |
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| T |
1884036 |
cgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagttcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 1895546 - 1895509
Alignment:
| Q |
85 |
atccatgtaaaaggaccatcttcttgtcatctttctat |
122 |
Q |
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| T |
1895546 |
atccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1911086 - 1910967
Alignment:
| Q |
1 |
cccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgtaaaaggac |
100 |
Q |
| |
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|||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |||||| || ||| |||| ||||||||| |||||| |
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| T |
1911086 |
cccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaacatccatgtacaaggac |
1910987 |
T |
|
| Q |
101 |
catcttcttgtcatctttct |
120 |
Q |
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|||||||||||||| ||||| |
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| T |
1910986 |
catcttcttgtcatgtttct |
1910967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
64 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
120 |
Q |
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|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
64 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
117 |
Q |
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|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
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| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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