View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_high_7 (Length: 630)

Name: NF18153_high_7
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_high_7
NF18153_high_7
[»] chr3 (6 HSPs)
chr3 (12-611)||(2821276-2821875)
chr3 (354-564)||(2834828-2835031)
chr3 (67-152)||(48196786-48196871)
chr3 (391-530)||(2771858-2771991)
chr3 (35-125)||(46574483-46574573)
chr3 (578-611)||(2771783-2771816)
[»] chr1 (3 HSPs)
chr1 (67-152)||(23539739-23539823)
chr1 (68-197)||(40569674-40569804)
chr1 (393-444)||(11114579-11114630)
[»] chr5 (2 HSPs)
chr5 (67-152)||(16397967-16398052)
chr5 (192-306)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (34-112)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (192-296)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (97-194)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (156-233)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 12 - 611
Target Start/End: Complemental strand, 2821875 - 2821276
Alignment:
Q  12 gagatgaaactatacaagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttga 111  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821875 gagatgaaactatacaagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactgacttga 2821776  T
Q  112 ttgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821775 ttgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaa 2821676  T
Q  212 ctctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagatatcataagatatattct 311  Q
    ||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2821675 ctctaatcctaagagatgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagatattataagatatattct 2821576  T
Q  312 atgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821575 atgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgat 2821476  T
Q  412 taacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2821475 taacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcattagcatcaatcttgattagccgaataaacaaattcattcaaatgaa 2821376  T
Q  512 atggttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccag 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821375 atggttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccag 2821276  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 564
Target Start/End: Original strand, 2834828 - 2835031
Alignment:
Q  354 gaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaa 453  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    || ||| |||| |||| ||||||||||||| | |||||||||||||   |||    
T  2834828 gaaatgatggatggatgaaaccggttggctgagacgcatacata----tcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataa 2834923  T
Q  454 tgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttg---attattattacaagagatgaagtaaagttc 550  Q
     |||||      | ||||| ||| || |||||  |||||| | ||||||||| ||||| ||||||||   |||||||||||||| | ||||| |||| ||    
T  2834924 cgatag------tagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattacaagggttgaaggaaagctc 2835017  T
Q  551 tcaccaatcttaaa 564  Q
     |||||||||||||    
T  2835018 ccaccaatcttaaa 2835031  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
Q  67 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 152  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| ||||    
T  48196871 gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta 48196786  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 530
Target Start/End: Complemental strand, 2771991 - 2771858
Alignment:
Q  391 atacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaat 490  Q
    |||||||||| |||||  ||||||||||||||||||||||| | || | |||||||| | | |||||||      | ||||||| |||| |||||  |||    
T  2771991 atacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatag------tagcatcaagcttggttagcaaaat 2771898  T
Q  491 aaacaaattcattcaaatgaaatggttttgattattatta 530  Q
    ||||| |||||||  |||||| | ||||||||||||||||    
T  2771897 aaacatattcatttgaatgaagtagttttgattattatta 2771858  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
Q  35 tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac 125  Q
    |||||||||||||  | |||| | |||| ||| |||||  ||||||||||||||||||  ||||||||||||||  || ||| ||||||||    
T  46574573 tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac 46574483  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 611
Target Start/End: Complemental strand, 2771816 - 2771783
Alignment:
Q  578 agaaatatcaaaaagacgtctgaatggagtccag 611  Q
    ||||||||||||| ||||||||||||||||||||    
T  2771816 agaaatatcaaaacgacgtctgaatggagtccag 2771783  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
Q  67 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 152  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | ||||||||||||    
T  23539823 gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta 23539739  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
Q  68 agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa 166  Q
    |||||||||||||||||||| | |||||||||||||||| ||  || |||| ||||||| |||  || ||  | |||||||||||| || |||| ||  |    
T  40569804 agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga 40569705  T
Q  167 ttcaaccttaaatcaagaacaaatcataata 197  Q
     |||| | |||||||||||||||||| ||||    
T  40569704 ctcaatcctaaatcaagaacaaatcaaaata 40569674  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 11114579 - 11114630
Alignment:
Q  393 acatacatgtcctcctgattaacttcaaatcaactaggcatataaatttaca 444  Q
    ||||||||||||| |||||||||||||||||||| |  ||| ||||||||||    
T  11114579 acatacatgtccttctgattaacttcaaatcaaccacacatctaaatttaca 11114630  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
Q  67 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 152  Q
    ||||||||||||||| |||||||||| || |||||||| | |  || |||| ||||| |||||| ||||| || ||||||||||||    
T  16397967 gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta 16398052  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 7380048 - 7379937
Alignment:
Q  192 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 291  Q
    |||||| ||||  ||||||| | |||||| || |||||||||   ||| || |||||||||   ||||||||||||  |||| ||||||| |||||||||    
T  7380048 ataataataagtaatataaaatttaatcccaatagatactct---aagattgtaaactaattctaggaaataacttaagatattctaatataatattaaa 7379952  T
Q  292 gatatcataagatat 306  Q
    | ||| |||||||||    
T  7379951 gttattataagatat 7379937  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
Q  34 ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat 112  Q
    |||||||| ||||| ||||||| | |||   | ||||||||||||||||||| |||||| ||||||||| | |||||||    
T  10723775 ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat 10723853  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 15999232 - 15999333
Alignment:
Q  192 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 291  Q
    |||||| ||||  ||||||| || |||||||||||||||||   |||| |||||||||||||| | || |||||||  |||||| ||||| |||||  ||    
T  15999232 ataataataagtaatataaaatcaaatcctaagagatactc---taagattataaactaatcatatgacataacttaagatactttaatataatatcgaa 15999328  T
Q  292 gatat 296  Q
    |||||    
T  15999329 gatat 15999333  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
Q  97 ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata 194  Q
    |||||| ||||||||| |||| ||||||| |||  || || || |||||||||||| ||||||| | | | |||| | | ||||||||||||||||||    
T  32200 ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata 32103  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
Q  156 ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct 233  Q
    ||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| |||||||||||||||||    
T  42286518 ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct 42286593  T

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