View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_high_9 (Length: 544)
Name: NF18153_high_9
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 21 - 526
Target Start/End: Complemental strand, 51575516 - 51575016
Alignment:
| Q |
21 |
ccggctttgaatgtcgttttaatttacagtaattgagaatccaacatgctattatgtcgatgtgcaaacgaaactccaagaagtttgaaccatggacata |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51575516 |
ccggctttgaatgtcgttttaatttacagtaattgagaatccaacatgctattatgttgatgtgcaaac-----tccaagaagtttgaaccatggacata |
51575422 |
T |
|
| Q |
121 |
ttctacgctgtgcaaattccagtttatctaatgtgtctaataacggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcat |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51575421 |
ttctacgcggtgcaaattccagtttatctaacgtgtctaatagcggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcat |
51575322 |
T |
|
| Q |
221 |
gccttataatactcggaacttgaacatgggtctacaccaagaaatcaatgggtggatcgtatcggaacctaactattcaaattcttctcctcacacgttt |
320 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51575321 |
gccttataatactcggaactcaaacatgggtctacaccaagaaatcaatgggtggatcgtatcggaacctgactattcaaattcttctcctcacacgttt |
51575222 |
T |
|
| Q |
321 |
gctattgatggaaatattatcgaggcaagtccaaatgccagggtggcttcatctacaccaatcgctaatgtcgaacccaactcaaattttgtgaatgaac |
420 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51575221 |
ggtattgatggaaatattatcgaggcaagtccaaatgccagggtggtttcatctacaccaatcgctaatgtcgaacccaactcaaattttgtgaatgaac |
51575122 |
T |
|
| Q |
421 |
cattgcctagaaattttagttttcctgatccgtttcttcttgcttctcagttttttggtatgtactctctcttgagtttttgtgagtcaatgtatacatt |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51575121 |
cattgcctagaaattttagttttcctgatccgtctcttcttgcttctcagttttttggtatgtactctctcttgagtttttgtgagtcaatgtatacatt |
51575022 |
T |
|
| Q |
521 |
tgaaaa |
526 |
Q |
| |
|
|||||| |
|
|
| T |
51575021 |
tgaaaa |
51575016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 35454603 - 35454485
Alignment:
| Q |
136 |
attccagtttatctaatgtgtctaataacggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagca-tgccttataatactc |
234 |
Q |
| |
|
||||||||||| ||||| | || ||||||||||| | ||||||||||||||||||| |||| ||| ||| ||||||||||||| | |||| |||||||| |
|
|
| T |
35454603 |
attccagtttacctaatatatc-aataacggtggattatcatttggtatggttgataagtctgctcatggagatatttcaagcattcccttgtaatactc |
35454505 |
T |
|
| Q |
235 |
ggaacttgaacatgggtcta |
254 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
35454504 |
ataactcaaacatgggtcta |
35454485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 1865535 - 1865626
Alignment:
| Q |
143 |
tttatctaatgtgtctaataacggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcatgccttataatactc |
234 |
Q |
| |
|
||||||||| | || |||||| ||||| ||||||| |||||| ||||| ||||| || ||| ||||||||||| ||||||||||||||| |
|
|
| T |
1865535 |
tttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactc |
1865626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University