View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_16 (Length: 480)
Name: NF18153_low_16
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 29792722 - 29793187
Alignment:
| Q |
1 |
tgttctaactgttgcacaaatttttcccctataaccccctactactgaagcagtcaaaaagaagaaaatctaacctccatgtgaaaatccctggggtttg |
100 |
Q |
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| T |
29792722 |
tgttctaactgttgtacaaatttttcccctataaccccctactactgaagcagtcaaaaagaagaaaatctaaccttcatgtgaaaatccctggggtttg |
29792821 |
T |
|
| Q |
101 |
atggtgtcactacaaccttgagaatttgtcagcttgctgcacatagagtacatgtctgcatacaccaagaggaaaaagatcttttagatactggattgtt |
200 |
Q |
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| T |
29792822 |
atggtgtcaccacaaccttgagaatttgtcagcttgctgcacatagagtacatgtctgcatacaccaagaggaaaaagatctttttgatactggattgtt |
29792921 |
T |
|
| Q |
201 |
gtttagcaggaaactgaaaattgaaattatgtagggaggcgggaatagtttcccatatttcagcaccttctagttcaaacaactaaagtcttcctaatac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
29792922 |
gtttagcaggaaactgaaaattgaaattatgtagggaggcgggaatagtttccaatatttcaacaccttctagttcaaacaactaaagtcttcctgatac |
29793021 |
T |
|
| Q |
301 |
acgacacaacacaagcatgttctgatcataaaaatagaaaatgccacataatacaaactattatttannnnnnngaataactagcaagtaggagaagtcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
29793022 |
acgacacaacacaagcatgttctgatcataaaaatagaaaatgccacataatacaaactattatttttttttttgaataactagcaagtaggagaagttg |
29793121 |
T |
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| Q |
401 |
aagacattgatgataaaaaatgacaacaacaaacacaccaaggaacgattcatgagtatcatattt |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793122 |
aagacattgatgataaaaaatgacaacaacaaacacaccaaggaacgattcatgagtatcatattt |
29793187 |
T |
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