View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_18 (Length: 471)
Name: NF18153_low_18
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Complemental strand, 45929071 - 45928629
Alignment:
| Q |
11 |
cagagaaaaaccgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaa |
110 |
Q |
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| T |
45929071 |
cagagagaaaccgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaa |
45928972 |
T |
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| Q |
111 |
ctccaccggtgacagaaacacgaagatcaagcaatggtcgtaatttttcacttaaggcatagatgccttcaatgattacgatacgggagctagggacttc |
210 |
Q |
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| T |
45928971 |
ctccaccggtgacagaaacacgaagatcaagcaatggtcgtaatttttcacttaaggcatagatgccttcaatgattacgatacgggagctagggacttc |
45928872 |
T |
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| Q |
211 |
aatagtcctgtgaggtaaatagtacaaaagaaatcaacaaaataactataaatgcaatatcatcttggttgggaataatatatatgatgctatttgttaa |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45928871 |
aatagtcctgtgcggtaaatagtacaaaagaaatcaacaaaataactataaatgcaatatcatcttggttgggaataatatatatgatgctatttgttaa |
45928772 |
T |
|
| Q |
311 |
agcttatgtgtgtccaaattcgcacgtgctattttgcacctcttttagcgacaccactcatgtgcgtgtatgtgttgtgtgtctctacatctcagagaca |
410 |
Q |
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| T |
45928771 |
agcttatgtgtgtccaaattcgcacgtgctattttgcacctcttttagcgacaccactcatgtgcgtgtatatgttgtgtgtctctacatctcagagaca |
45928672 |
T |
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| Q |
411 |
atgaatgttggaaggtgaatgcagagacagagagcaatgaagc |
453 |
Q |
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| T |
45928671 |
gcgaatgttggaaggtgaatgcagagacagagagcaatgaagc |
45928629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 28073648 - 28073470
Alignment:
| Q |
20 |
accgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaactccaccgg |
119 |
Q |
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| T |
28073648 |
accgtctcagatatttgataaataatttcttcgggttcttggcctgcacgttgtatgtcacgtatcactcgctttacaaggtcaaggtgaactccacctg |
28073549 |
T |
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| Q |
120 |
tgacagaaacacgaagatcaagcaatggtcgtaatttttcacttaaggcatagatgccttcaatgattacgatacggga |
198 |
Q |
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| T |
28073548 |
taacagaaactcgaaggtccagcaatgttcgcaacttctcactcaaggcatagataccctcaataatcacaatacggga |
28073470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 29536164 - 29536049
Alignment:
| Q |
20 |
accgtttcagagatttgatgaattatttcttcaggctcttgaccagctcgttgaatgtcccgcaaaacacgcttgacaaggtcaaaatgaactccaccgg |
119 |
Q |
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| T |
29536164 |
accgtctcagatatttgatgaataatttcttgaggttcttgaccagcacgttgtatatcacgtataactcgtttaataaggtcaagatgaacaccaccag |
29536065 |
T |
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| Q |
120 |
tgacagaaacacgaag |
135 |
Q |
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| T |
29536064 |
ttacagatactcgaag |
29536049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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