View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_2 (Length: 793)
Name: NF18153_low_2
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 707; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 19 - 775
Target Start/End: Original strand, 47839906 - 47840664
Alignment:
| Q |
19 |
atttccatggcagataaatgatcatggcaggttggtggttgtgtattttcttggagcttgaacaacattttgaataacgtttgacagtgtggaaactgct |
118 |
Q |
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| T |
47839906 |
atttccatggcagataaatggtcatggcaggttggtagttgtgtattttcttggagcttgaacaacattttgaataacgtttgacagtgtggaaactgct |
47840005 |
T |
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| Q |
119 |
gtttt--gagaagtctggtacggaaggttcgtccgtgggtcgaagaggcagattcttttgtttggctacctgaatcgatgaagtgttttactgtgaaaag |
216 |
Q |
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| T |
47840006 |
gttttttgagaagtctggtacggaaggttcgtccgtgggtcgaagaggcagattcttttgtttggctacctgaatcgatgaagtgttttactgtgaaaag |
47840105 |
T |
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| Q |
217 |
ctgctagatgctgttgtctaatttccggacagttgaggacacggacggtgactttttggcagctgtgagacaactattgataacattggtaccttaaaaa |
316 |
Q |
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| T |
47840106 |
ctgctagatgctgttgtctaatttccggacagttgaggacatggacggtgactttttggcagctgtgagacaactattgataacattggtaccttaaaaa |
47840205 |
T |
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| Q |
317 |
atttgtgtttttggttggcgattgcttcaagagaaaatgacaataagattcatcaacaaagttgtgnnnnnnnctttaatgaaatcgagacagagggaca |
416 |
Q |
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| T |
47840206 |
atttgtgtttttggttggcgattgcttcaagagaaaatgacaataagattcatcagcaaagttgtgtttttttctttaatgaaatcgagacagagggaca |
47840305 |
T |
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| Q |
417 |
tttgtttgtaatgtatccgaaaaccaaggagattcggaatttgatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgatagaaaaa |
516 |
Q |
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| T |
47840306 |
tttgtttgtaatgtatccgaaaaccaaggagattcggaatttgatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgatagaaaaa |
47840405 |
T |
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| Q |
517 |
ttccttgttgttcaactcagtcggaaaagggaagagaggtaaaagagtttctcatttaatttgtgtaacaacgttgtggacgtgtggtgcatatggttgg |
616 |
Q |
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| T |
47840406 |
ttccttgttgttcaactcagtcggaaaagggaagagaggtaaaagagtttctcatttaatttgtgtaacaacgttgtggacgtgtggtgcatatggttgg |
47840505 |
T |
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| Q |
617 |
agaaaaatgatgtccttttaaatggaaaagtggctaatatttcggagctagtggatcgtataattcgttttccatggtcttggtttatttgtgttgcttc |
716 |
Q |
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| T |
47840506 |
agaaaaatgatgtccttttaaatggaaaagtggctaatatttcggagctagtggatcgtataattcattttccatggtcttggtttatttgtgttgcttc |
47840605 |
T |
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| Q |
717 |
agggttctggagctgctattatttatttcagatggtgttttttgtgttaattcctgttt |
775 |
Q |
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| T |
47840606 |
agggttctggagctgctattatttatttcagatggtgttttttgtgttaattcctgttt |
47840664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 26322641 - 26322692
Alignment:
| Q |
459 |
gatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgata |
510 |
Q |
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| T |
26322641 |
gatttttaattggatgaagtggaatgcaataggttggggagaagagttgata |
26322692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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