View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_low_21 (Length: 447)
Name: NF18153_low_21
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 30665881 - 30666294
Alignment:
| Q |
19 |
attggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30665881 |
attggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcg |
30665980 |
T |
|
| Q |
119 |
agatcgttgatgaacagacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30665981 |
agatcgttgatgaacagacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttc |
30666080 |
T |
|
| Q |
219 |
cactttcaagctctccagcactcatcatgatggggctgtaacacaatttcaacatcaaattagttagaagattatgtagcacaacatatgctatatactg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666081 |
cactttcaagctctccagcactcatcatgatggggctgtaacacaatttcaacatcaaattatgtagaagattatgtagcacaacatatgctatatactg |
30666180 |
T |
|
| Q |
319 |
agcatatttggaagagcttctttggtcttgcttcatgaaataagcacttgaattaggccatgtttgcacaataagtttattaagaccttatagcataaac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666181 |
agcatatttggaagagcttctttggtcttgcttcatgaaataagcacttgaattaggccatgtttgcacaataagtttattaagaccttatagcataaac |
30666280 |
T |
|
| Q |
419 |
gttgatcgtatatg |
432 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30666281 |
attgatcgtatatg |
30666294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 34435250 - 34435480
Alignment:
| Q |
26 |
gggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgt |
125 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
34435250 |
gggttatcagcaatgttcataagtgttgcatttaccatttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgt |
34435349 |
T |
|
| Q |
126 |
tgatgaacagacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttccactttc |
225 |
Q |
| |
|
| ||||| ||||||||||| || || || || || ||||| | ||||| | |||||| |||| || ||||||||||| ||||| |||||||||||||| |
|
|
| T |
34435350 |
ttatgaagagacaacacattttcccttttcttattatgtctgatgcttctctgtatctttgtcgaattagttttgctggttctcccgcatttccactttc |
34435449 |
T |
|
| Q |
226 |
aagctctccagcactcatcatgatggggctg |
256 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
34435450 |
tagctctccagcactcatcatgatagggctg |
34435480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 6853614 - 6853850
Alignment:
| Q |
19 |
attggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcg |
118 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || || |||||||| | ||| ||||||||||| |
|
|
| T |
6853614 |
attggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattgagtagtgccacccattctaccagctcctgcatca |
6853713 |
T |
|
| Q |
119 |
agatcgttgatgaacagacaacacatctttcccttcctgataatgtcagcggcttcacggtatctctgtctgatcagttttgctggctctcctgcatttc |
218 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| || ||||||||||| | || |||||||| || || || |||| ||||| |||||||||||||||| |
|
|
| T |
6853714 |
agatcattgatgaagagacagcacatctttccttttctgataatgtcggacgcctcacggtacctttgcctaatcaactttgcaggctctcctgcatttc |
6853813 |
T |
|
| Q |
219 |
cactttcaagctctccagcactcatcatgatggggct |
255 |
Q |
| |
|
||||||| | ||||| ||||||||||| || ||||| |
|
|
| T |
6853814 |
cactttccaattctccggcactcatcattatagggct |
6853850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University