View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_24 (Length: 419)
Name: NF18153_low_24
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 35127991 - 35128400
Alignment:
| Q |
1 |
ttcaccacataagcttgatgatgagaagccgatgagtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggt |
100 |
Q |
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| T |
35127991 |
ttcaccacataagcttgatgatgagaagccgatgagtggaggtacaattatggaagggtttgatgaaagtgaagaatttaaagaacccttcgagtttggt |
35128090 |
T |
|
| Q |
101 |
gtcacaaatgttgttttagaggaatgtgaggatgaggtcgaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaa |
200 |
Q |
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| T |
35128091 |
gtcacaaatgttgttttagaggaatgtggagatgaggtggaagagggtgatatagaggaggaagcaatgcataaagaaacaaaagggctattagaaaaaa |
35128190 |
T |
|
| Q |
201 |
ttagagatgagggtagaaatgatatgagaggagaatatgcaaaaggagtttccagtggaacaagtgaaagccatcaagatattggttcagttgttgaaaa |
300 |
Q |
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| T |
35128191 |
ttagagatgagggtagaaatgatatgagaggagaatatgcaaaaggagtttccagtggaacaagtgaaagccatcaagatattggttcagttgttgaaaa |
35128290 |
T |
|
| Q |
301 |
tgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcaaggatacagttcaatcaaga |
400 |
Q |
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| T |
35128291 |
tgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcgaggatacagttcaatcaaga |
35128390 |
T |
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| Q |
401 |
aatgatgatg |
410 |
Q |
| |
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| T |
35128391 |
aatgatgatg |
35128400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 35128636 - 35128751
Alignment:
| Q |
295 |
tgaaaatgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtcaagaagattcaaaagtatgcaaggatacagttcaa |
394 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||| |||| |
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| T |
35128636 |
tgaaaatgtggaagcaggacaggaagacaaacatgatttgtggactgaaggagaaatgagaaatcaagaagattcaaaagtatgcgaggagacagctcaa |
35128735 |
T |
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| Q |
395 |
tcaagaaatgatgatg |
410 |
Q |
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| T |
35128736 |
tcaagaaatgatgatg |
35128751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 173 - 393
Target Start/End: Complemental strand, 26779045 - 26778813
Alignment:
| Q |
173 |
aaagaaacaaaagggctattagaaa------aaattagagatgagggtagaaatgatatgagaggagaatatgcaaaaggagtttccagtggaaca---- |
262 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||| |||||||||| || | ||||||||| |
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| T |
26779045 |
aaagaaacaaaagggctattagaaagaaaaaaaatcagagatgagggtaggactgatatgagaggagaagatgcaaaagggattcctagtggaacagtga |
26778946 |
T |
|
| Q |
263 |
-agtgaa-agccatcaagatattggttcagttgttgaaaatgtggaagcagaacaggaagacaaacatgatttgtggactgaaggagaaatgaggagtca |
360 |
Q |
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| T |
26778945 |
gagtgatcatgaatcatgatattggtccagttgttgaaaatatgcaagtagcactggaagacaaactgggtttggggattgatggagaaatgaggaatca |
26778846 |
T |
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| Q |
361 |
agaagattcaaaagtatgcaaggatacagttca |
393 |
Q |
| |
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| T |
26778845 |
aacagattcaagagtatgctaggagacggttca |
26778813 |
T |
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