View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_29 (Length: 381)
Name: NF18153_low_29
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 58 - 371
Target Start/End: Complemental strand, 41074818 - 41074505
Alignment:
| Q |
58 |
cataaatgatctgacacaccagaggtacaaaacagtttctcacctttcatacagataaattctgatcaaccagaagaacaggtgaagctattgacaattt |
157 |
Q |
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| T |
41074818 |
cataaatgatctgacacaccagaggtacaaaacagtttctcacctttcatacagataaattctgatcaaccagaagaacaggtgaagctattgacaattt |
41074719 |
T |
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| Q |
158 |
gcaatcccacaccactaggaaagactcaaactaaaaccgtcttaatgagatatcataagtgtattctatagttaatttggatacatatgtgataagataa |
257 |
Q |
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| T |
41074718 |
gcaatcccacaccactaggaaagactcaaactaaaaccgtcttaatgagatatcataagtgtattctgtagttaatttggatacatatgtgataagataa |
41074619 |
T |
|
| Q |
258 |
gtctacataaactctaaataagctttttcaaaatatggaaacacaacatttcatgcttgtcaatgtgtatacgtggtattcaagaatacaagaaaatgct |
357 |
Q |
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| T |
41074618 |
gtctacataaactctaaataagctttttcaaaatatggaaacacaacatttcatgcttgtcaatgtgtataggtggtattcaagaatacaagcaaatgct |
41074519 |
T |
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| Q |
358 |
caacacaacctttg |
371 |
Q |
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| T |
41074518 |
caacacaacctttg |
41074505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 41086277 - 41086057
Alignment:
| Q |
5 |
ttgtttcagtttagtgacaacaaacattctgctatttccagccaaaaccat------gtcataaatgatctg--acacaccagaggtacaaaacagtttc |
96 |
Q |
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| T |
41086277 |
ttgtttcagtttagcgacaacaatcattctt-tatttccagccaaaaccatcaaagagctataaatgatttataacacaccaga--tacaaaacagtgtc |
41086181 |
T |
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| Q |
97 |
tcacctttcatacagataaattctgatcaaccagaagaacaggtgaagctattgacaattt-gcaatcccacaccactaggaaagact--caaactaaaa |
193 |
Q |
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| T |
41086180 |
acacctttcacacagataaattctgatcaaccagaagaacaggtgaagctatccacactttagcaatcccatgccactagaaaagactcgcaaactagaa |
41086081 |
T |
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| Q |
194 |
ccgtcttaatgagatatcataagt |
217 |
Q |
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| T |
41086080 |
atgtctttatgagatatcataagt |
41086057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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