View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_30 (Length: 371)
Name: NF18153_low_30
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 36399939 - 36400309
Alignment:
| Q |
1 |
caagttcagaagattgaagttgcagagacccaacctttgtagagaaagcaatagtggtcaccagtatcaggctaaagatgattttcggcttcagaatgaa |
100 |
Q |
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| T |
36399939 |
caagttcagaagattgaagttgcagagacccaacctttgtagagaaagcaatagtggtcaccagtatcaggctaaagatgattttcggcttcagaatgaa |
36400038 |
T |
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| Q |
101 |
tcaacgtctcgagagatgaatatgtgtaagttttccacactgggagtagtttttcagtcactcattataattaatatatctataaaattcttggtctagt |
200 |
Q |
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| T |
36400039 |
tcaacgtctcgagagatgaatatgtgtaagttttccacactgggagtagtttttcagtcactcattataattaatatatctataaaattcttggtctagt |
36400138 |
T |
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| Q |
201 |
aagaacttgacaagaaaaagataattgacattagaataataatagacatatttaaaagtacatagagattcgtgagtttagccaaactagatattgtcat |
300 |
Q |
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| T |
36400139 |
aagaacttgacaagaaaaagataattgacattagaataataatagacatatttaaaaggacatagagattcgtgagtttagccaaactagatattggcat |
36400238 |
T |
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| Q |
301 |
ttgtaatcacatgcttaagacactcctcttgatcacatgtttaagttaaccaagttgtttatcacttggac |
371 |
Q |
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| T |
36400239 |
ttgtaatcacatgcttaagacactcctcctgatcacatgtttaagttaaccaagttgtttatcacttggac |
36400309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 36393676 - 36393953
Alignment:
| Q |
10 |
aagattgaagttgcagagacccaacctttgtagagaaagcaatagtggtcaccagtatcaggctaaagatgattttcggcttcagaatgaatcaacgtct |
109 |
Q |
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| T |
36393676 |
aagattgaagttgcagaaatccaacctttgcggagaaagcaagagtgatcaccgatatcagtgaaaagat---tttcagcttctgagtagttcaatgtct |
36393772 |
T |
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| Q |
110 |
cgagagatgaatatgtgtaagttt-tccacactgggagtagtttttcagtcactcattat---aattaatatatctat--aaaattcttggtctagtaag |
203 |
Q |
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| T |
36393773 |
cgagagatgaatatgtgtaacagtgtccacattgggagtaattttttagtcactccttattgcaattaatatatctaacaaaaatcctaggtcttataaa |
36393872 |
T |
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| Q |
204 |
aacttgacaagaaaaagataattgacattagaataataatagacatatttaaaagtacatagagattcgtgagtttagcca |
284 |
Q |
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| T |
36393873 |
aacttgacaagaaaaagataattgacattagaataatactagtcatattttaaagttcatacagattcgtgagttgagcca |
36393953 |
T |
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