View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_low_33 (Length: 363)
Name: NF18153_low_33
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_33 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 37162911 - 37162576
Alignment:
| Q |
10 |
agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37162911 |
agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat |
37162812 |
T |
|
| Q |
110 |
ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37162811 |
ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc |
37162712 |
T |
|
| Q |
210 |
ataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaaaacgtactccatccgaggttcaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37162711 |
ataaaatgaactttggaggtcaaggaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaaaacgtactccatccgaggttcaaa |
37162612 |
T |
|
| Q |
310 |
tactttaaatgtcgcaactccatcaatgatgtgttg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162611 |
tactttaaatgtcgcaactccatcaatgatgtgttg |
37162576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 38745936 - 38745617
Alignment:
| Q |
10 |
agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat |
109 |
Q |
| |
|
|||||||| | ||||||||| ||||| |||||||| || | ||| |||||| ||||||| ||| ||||||||||||||| |||||||||||| |||| |
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|
| T |
38745936 |
agatgaagttcctgcaaatttgaaagacttccaagtggacgaagaacggttcccacaagatcatttgaactaagatcaaggtactgcaaatgagagagat |
38745837 |
T |
|
| Q |
110 |
ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc |
209 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
38745836 |
ttccaagttaatgagggattgtaccctcaaggccattgtctgaaagatcaagatattgcaagtgcgaaagacgagcaagatcctttggaattcttccccc |
38745737 |
T |
|
| Q |
210 |
ataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaaaacgtactccatccgaggttcaaa |
309 |
Q |
| |
|
|| |||||||| |||||||||||| ||||||||||| |||| | ||||||||||||||||||||| | ||||||||||| | |||| | |||||||||| |
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|
| T |
38745736 |
atcaaatgaaccttggaggtcaagaaatctcaagtttcttagaaaaccaaataattctgggaaataactgtttgaaaacagattccaactgaggttcaaa |
38745637 |
T |
|
| Q |
310 |
tactttaaatgtcgcaactc |
329 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
38745636 |
tactttaaatgccgcaactc |
38745617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 37137319 - 37136993
Alignment:
| Q |
21 |
ctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaag---attattccaactaagatcaaggtgctgcaaatgagacagatttccaagt |
117 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||||||||| || ||| ||||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
37137319 |
ctgcaaatgtgaaagatttccaagctgataaggaatttttccaacaaggccataatttgaactaagatcaagatgctgcaaatgagagagatttccgagt |
37137220 |
T |
|
| Q |
118 |
tgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctccataaaatg |
217 |
Q |
| |
|
||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| ||| | ||| |
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|
| T |
37137219 |
tgaggacggattgtaccctcgaggccattccttgaaagatcaagatattgcaagtgcgacagatgagcaagatcatttggaattcttccgccagagtatg |
37137120 |
T |
|
| Q |
218 |
aactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaaaacgtactccatccgaggttcaaatactttaa |
317 |
Q |
| |
|
|| || ||||||||| |||||||||||||||| |||||||||||||||||| | |||| |||||| ||| | |||| |||||||||||||||||| |
|
|
| T |
37137119 |
aagctttgaggtcaaggaatctcaagttgcttagagaaccaaataattctggaatatcactgtttgttaacagattccaagagaggttcaaatactttaa |
37137020 |
T |
|
| Q |
318 |
atgtcgcaactccatcaatgatgtgtt |
344 |
Q |
| |
|
||| |||| || ||||||||| |||| |
|
|
| T |
37137019 |
atgctgcaaatcaatcaatgatatgtt |
37136993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 77 - 284
Target Start/End: Complemental strand, 37130104 - 37129897
Alignment:
| Q |
77 |
aactaagatcaaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcga |
176 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
37130104 |
aactaagatcaagatgctgcaaatgagagagatttccaaattgatgagggattgtacccttgaggccattccatgaaagatcaagatattgcaagtgcaa |
37130005 |
T |
|
| Q |
177 |
aagacgagaaagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatca |
276 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||| | |
|
|
| T |
37130004 |
aagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaatta |
37129905 |
T |
|
| Q |
277 |
ttgtttga |
284 |
Q |
| |
|
| |||||| |
|
|
| T |
37129904 |
tcgtttga |
37129897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 35144240 - 35144464
Alignment:
| Q |
21 |
ctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagatttccaagttga |
120 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| ||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
35144240 |
ctgcaaatttaaaaggcttccaagctgatgaggaatggctccgacaagatgattcgaactgagatcaagatgctgcaaatgagagagatttccaagttga |
35144339 |
T |
|
| Q |
121 |
tgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctccataaaatgaac |
220 |
Q |
| |
|
||||||||| |||||| || || || | |||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || ||| ||| |
|
|
| T |
35144340 |
tgagggatttcaccctccagtctgttaaattaaagatcaagatattgcaagtgtgaaagacaggcaagatcatttggaattcttccatgatgaaacgaag |
35144439 |
T |
|
| Q |
221 |
tttggaggtcaagtaatctcaagtt |
245 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
35144440 |
cttggaggtcaaggaatctcaagtt |
35144464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 284
Target Start/End: Complemental strand, 37144393 - 37144195
Alignment:
| Q |
77 |
aactaagatcaaggtgctgcaaat-gagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcg |
175 |
Q |
| |
|
||||||||||||||| ||||||| || | |||||| ||||||||||||||||||||| || |||| ||| |||||||||||| || ||| |
|
|
| T |
37144393 |
aactaagatcaaggtactgcaaaacgaaagagattttcaagttgatgagggattgtacgcttgagg----------aaatatcaagatattgtaaatgca |
37144304 |
T |
|
| Q |
176 |
aaagacgagaaagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatc |
275 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||| ||| |||||||||||||| |||| |
|
|
| T |
37144303 |
aaagacgagcaagattatttggaattcttcctccatcaaatgaagcatggaggtcaaggaatctcaagtttcttagagagccaaataattctggaaaatt |
37144204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 37144529 - 37144405
Alignment:
| Q |
10 |
agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat |
109 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
37144529 |
agatgaagctcctgtaaatttgaaaggcttccaagttgatgaggaatggttccaacaagatcattcccactaagatcaaggtattgcaaatgagagagat |
37144430 |
T |
|
| Q |
110 |
ttccaagttgatgagggattgtaccctc |
137 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
37144429 |
ttccaa---gatgagggattgtaccctc |
37144405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 37130246 - 37130125
Alignment:
| Q |
10 |
agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat |
109 |
Q |
| |
|
|||||||| | ||| ||||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
37130246 |
agatgaagttcctgtaaatttgaaaggcttccaagttgatgaggaatggttccaacaagaaaatttgaactaagatcaaggtaatgcaaatgagagagat |
37130147 |
T |
|
| Q |
110 |
ttccaagttgatgagggattgt |
131 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37130146 |
ttccaagttgatgagggattgt |
37130125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 37137399 - 37137291
Alignment:
| Q |
13 |
tgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagatttc |
112 |
Q |
| |
|
||||||| ||| |||| |||||||||||||| |||| |||||| |||||||||||| ||| ||||||||||||||| ||||||||| || ||||||| |
|
|
| T |
37137399 |
tgaagctcctgtaaatctgaaaggcttccaagttgatgaggaatcgttccaacaagaacatttgaactaagatcaaggtactgcaaatgtgaaagatttc |
37137300 |
T |
|
| Q |
113 |
caagttgat |
121 |
Q |
| |
|
|||| |||| |
|
|
| T |
37137299 |
caagctgat |
37137291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 3024863 - 3025190
Alignment:
| Q |
10 |
agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat |
109 |
Q |
| |
|
|||||||| | |||||| || ||||| |||||||| || | ||| |||||| |||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
3024863 |
agatgaagttcctgcaattttgaaagacttccaagtggacgaagaacggttcccgcaagatcatttgaactaagatcaaggtactgcaaatgagagagat |
3024962 |
T |
|
| Q |
110 |
ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
3024963 |
ttccaagttgatgagggattgtaccctcaaggccattgtctgaaagatcaagatattgcaagtgcgaaagacgagcaagatcctttggaattcttccccc |
3025062 |
T |
|
| Q |
210 |
ataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaaaacgtactccatccgaggttcaaa |
309 |
Q |
| |
|
|| |||||||| |||||| ||||| ||||||||||| |||| ||||||||||||||||||||||| | ||||||||||| | |||| | |||||||||| |
|
|
| T |
3025063 |
atcaaatgaaccttggagatcaagaaatctcaagtttcttagagaaccaaataattctgggaaataactgtttgaaaacagattccaactgaggttcaaa |
3025162 |
T |
|
| Q |
310 |
tactttaaatgtcgcaactccatcaatg |
337 |
Q |
| |
|
||||||||||| |||||||| ||||||| |
|
|
| T |
3025163 |
tactttaaatgccgcaactcgatcaatg |
3025190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 29723523 - 29723743
Alignment:
| Q |
25 |
aaattcgaaaggcttccaagctgataaggaatggttccaacaaga---ttattccaactaagatcaaggtgctgcaaatgagacagatttccaagttgat |
121 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| | ||||||||| | |||||||||||||| |
|
|
| T |
29723523 |
aaatttgaaaggcttccaagttgatgaggaatggttccaacaagaacattattataactaagatcaaggtacaacaaatgagagaaatttccaagttgat |
29723622 |
T |
|
| Q |
122 |
gagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctccataaaatgaact |
221 |
Q |
| |
|
|||||||||| ||||||| | ||||| ||||||||||||||||||||| || ||||| ||| ||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
29723623 |
aagggattgtaacctcgagacgattctctgaaagatcaagatattgcaactgtgaaaggcgaacaagatcatttggatttcttccgtcatcaaatgaacc |
29723722 |
T |
|
| Q |
222 |
ttggaggtcaagtaatctcaa |
242 |
Q |
| |
|
|||||||||||| | |||||| |
|
|
| T |
29723723 |
ttggaggtcaaggagtctcaa |
29723743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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