View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_low_34 (Length: 362)
Name: NF18153_low_34
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_34 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 1891143 - 1890789
Alignment:
| Q |
8 |
gacatcatcagaaaaaacaagaagaaattagtctgtataaatactaagtgcgtgtttgaaatcgcttatagtttgacaaaatcacgaaggcactataact |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1891143 |
gacatcataagaaaaaacaagaagaaattagtctgtataaatactaagtgcgtgtttgaaatcgcatatagtttgacaaaatcacgaagatactgtaact |
1891044 |
T |
|
| Q |
108 |
tttgttaagtgaaatgtaattgctaagtgtaagtttgaaatgacgatcagtttccaaaactgttttttgtcaaaatctcgatggtacagtgtgatgaacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1891043 |
tttgttaagtgaaatgtaattgctaagtgtaagtttcaaatcacgatgagtttccaaaactgttttttgtcaaaatcttgatggtacagtgtgatgaacc |
1890944 |
T |
|
| Q |
208 |
tgacaaatttaccgtcaatctaaacatgtactaagttgttatatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1890943 |
tgacaaatttaccgtcaatctaaacatgtactaagttgttgtatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctaaaaaaagt |
1890844 |
T |
|
| Q |
308 |
gataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatga |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1890843 |
gataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatga |
1890789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 1884245 - 1884145
Alignment:
| Q |
262 |
ttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatg |
361 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1884245 |
ttctaacgtcgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatg |
1884146 |
T |
|
| Q |
362 |
a |
362 |
Q |
| |
|
| |
|
|
| T |
1884145 |
a |
1884145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 1878189 - 1878135
Alignment:
| Q |
306 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacat |
360 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1878189 |
gtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacat |
1878135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University