View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_35 (Length: 361)
Name: NF18153_low_35
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 13855998 - 13855657
Alignment:
| Q |
1 |
cagcaccaaatgtaaaacaggtgtgaatctgttaaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttctaacacag |
100 |
Q |
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| T |
13855998 |
cagcaccaaatgtaaaacaggtgtgaatctgttcaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttctaacacag |
13855899 |
T |
|
| Q |
101 |
cataatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatttacaacaactttaa |
200 |
Q |
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| T |
13855898 |
cataatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatatacaacaactttaa |
13855799 |
T |
|
| Q |
201 |
aattgttcaaatttacataagggcaagggaccatgacagactaacatcaatagcataactttctgttttggttctaaattttggatctagcttatagtta |
300 |
Q |
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| T |
13855798 |
aattgttcaaatttacataagggcaagggaccatgacagactaacatcaatggcataactttctgttttggttctaaattttggatctagcttatagtta |
13855699 |
T |
|
| Q |
301 |
agtaacaatgaagtacgaacactcctcgggttacgtgtgtcg |
342 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||| |
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| T |
13855698 |
agtaactatgaagtacgaacactcctcgggttaggtgtgtcg |
13855657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 13852119 - 13851824
Alignment:
| Q |
1 |
cagcaccaaatgtaaaacaggtgtgaatctgttaaatgccaaataaaaccatttatcagtgcagaacatgtatgcaaaagatataacatttctaacacag |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13852119 |
cagcaccaaatgtaaaacaggtgtgaatctgtgcaatgtcaaataaaaccatatatcagtgcagaacatgtatgcaaaagatataaca------------ |
13852032 |
T |
|
| Q |
101 |
cataatcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaaacttgtgattgaaatatacacacatatttacaacaactttaa |
200 |
Q |
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| T |
13852031 |
----atcattagaacataattcagaatcataactggtgcttgaaaacttgatgtctaagcttgtgattgaaatatacacacatatatacaacaactttaa |
13851936 |
T |
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| Q |
201 |
aattgttcaaatttacataagggcaagggaccatgacagactaacatcaatagcataactttctgttttggttctaaattttggatctagcttatagtta |
300 |
Q |
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|||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13851935 |
aatt-ttcaaatttacataagggcaagggaccccgatagactaacatcaaaggcataactttctgttttggttcttaattttggatctagcttatagtta |
13851837 |
T |
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