View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_low_38 (Length: 350)
Name: NF18153_low_38
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_38 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 32167175 - 32167508
Alignment:
| Q |
1 |
taaagctttctttttcaatggaactgtccaatctgatgtgtatattacctgactaaacccatcaggccaagttattgaaacggcataatttcccattggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167175 |
taaagctttctttttcaatggaactgtccaatctgatgtgtatattacctgactaaacccatcaggccaagttattgaaacggcataatttcccattggc |
32167274 |
T |
|
| Q |
101 |
cgaatttcttccggttcaatgtaatcaggaatatcggtatactgcaatttttgctcccccgtccattcatcctgtttaaaatgagttggataaagttagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32167275 |
cgaatttcttccggttcaatgtaatcaggaatatcggtatactgcaatttttgctcccccgtccattcatcctgtttaaaatgagatggataaagttagc |
32167374 |
T |
|
| Q |
201 |
ttctaatgagatgaataaacagca-nnnnnnngtttatcttaaatatcaacataccacactctgagcagaccgatcattccgtctcactgttgcaggatg |
299 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167375 |
ttctaatgatatgaataaacagcattttttttgtttatcttaaatatcaacataccacactctgagcagaccgatcattccgtctcactgttgcaggatg |
32167474 |
T |
|
| Q |
300 |
cagaaagaattcttcatctgaatctggtactttt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32167475 |
cagaaagaattcttcatctgaatctggtactttt |
32167508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University