View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18153_low_4 (Length: 718)
Name: NF18153_low_4
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_4 |
 | |
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| [»] scaffold0004 (2 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Complemental strand, 49350226 - 49349522
Alignment:
| Q |
1 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgannnnnnnggcagagacatctataaatatatatgaagagcttgttaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49350226 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgatttttttggcagagacatctataaatatatatgaagagcttgttaagg |
49350127 |
T |
|
| Q |
101 |
aaggtattaat-----taagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagta |
195 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
49350126 |
aaggtattaatataattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagt----a |
49350031 |
T |
|
| Q |
196 |
aaagtggaaaatctatgtcccatggcctcagctcaaagcgttggaattgagggatatttgaattttgtataattggattcatttgtctttcaagggcttt |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49350030 |
aaagtggaaaatttatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggcttt |
49349931 |
T |
|
| Q |
296 |
atgtgctcattgtagactaaaacttctaggcgttttt-cccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49349930 |
atgtgctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctt |
49349831 |
T |
|
| Q |
395 |
tcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgtcagcaatttggtttgatcaggatt |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
49349830 |
tcagttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttcttaactgtggatgtgagcaatttggtttgatcaggatt |
49349731 |
T |
|
| Q |
495 |
atgcaatctgaatactctgtgtgatagacnnnnnnnggttcttgtaggatatacagtatggtgtatatatctagcggattgtgttaatggattaacttga |
594 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49349730 |
atgcaatctgaatactctgtgtgatagactttttttggttcttgtaggatatatagtatggtgtatatatctagcggattgtgttaatggattaacttga |
49349631 |
T |
|
| Q |
595 |
aaaattgtctcatgtggagttattctaaattctaaaaagagcatgtagggttagaagttttgtaaatgaccaagtgaagtctattctaaaaatagtttaa |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49349630 |
aaaattgtctcatgtggagttattctaaattctaaaaagagcatgtagggttagaagttttgtaaatgaccaagtgaagtctattctaaaaatagtttaa |
49349531 |
T |
|
| Q |
695 |
atgaatgat |
703 |
Q |
| |
|
||||||||| |
|
|
| T |
49349530 |
atgaatgat |
49349522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 143 - 518
Target Start/End: Complemental strand, 49361998 - 49361619
Alignment:
| Q |
143 |
tactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaagtggaaaatctatgtcccatggcctcagctcaaagcgttggaat |
242 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||||||||| |||||||| |||| ||| |
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|
| T |
49361998 |
tactaagaatgatcctctactgccattgaagaacttagatcaaggagt----aaaagtggaaaatttacgtcccatggcctcggctcaaagtgttgtaat |
49361903 |
T |
|
| Q |
243 |
tgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgtgctcattgtagactaaaacttctaggcgttttt-cccctcctt |
341 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||| | ||| | |
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|
| T |
49361902 |
tgagggatatttaaattttgaataattggattcatttgtctttcaagggctttatgtgctca-tgtagactaaaaattaaaggcatttttattcttccat |
49361804 |
T |
|
| Q |
342 |
tttgcctggtggaaac-taaagggtattgttctataaacaattatctttttctttcagttatatgggacaacattatttttctgagttggaagttgttgc |
440 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||||||||| || |||| ||| || || |||||||||||||||||||||||| |
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|
| T |
49361803 |
tttgcctggtggaaacttagagggtattattctataaacaattatctttttcttacatttatttggtaccac---atttttctgagttggaagttgttgt |
49361707 |
T |
|
| Q |
441 |
ttgtatgccacgt----------ttctaaactgtggatgtcagcaatttggtttgatcaggattatgcaatctgaatactctgtgtga |
518 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||| || || ||||| |||| ||||||||| ||| | ||||||| |
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|
| T |
49361706 |
ttgtgtgccacgtttcatgtggattctaaactgtggatgtgagcaatatgattcgatcaagattctgcaatctggatagtttgtgtga |
49361619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 419 - 518
Target Start/End: Complemental strand, 19030309 - 19030210
Alignment:
| Q |
419 |
tttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgtcagcaatttggtttgatcaggattatgcaatctgaatactctgtgtga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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|
| T |
19030309 |
tttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgtgagcaatttggtttaatcaggattctgcaatctggatactctgtgtga |
19030210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 622
Target Start/End: Complemental strand, 19030112 - 19030052
Alignment:
| Q |
562 |
tatctagcggattgtgttaatggattaacttgaaaaattgtctcatgtggagttattctaa |
622 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
19030112 |
tatctagtggattgttttaatggattaacatgaaaaattgtcttatgtggagttattctaa |
19030052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 250533 - 250072
Alignment:
| Q |
1 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaattt-gagctgannnnnnnggcagagacatctataaatatatatgaagagcttgttaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250533 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaattttgagctgatttttttggcagagacatctataaatatatatgaagagcttgttaag |
250434 |
T |
|
| Q |
100 |
gaaggtattaattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaag |
199 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
250433 |
gaaggtattaattaagaag---tgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagt----aaaag |
250341 |
T |
|
| Q |
200 |
tggaaaatctatgtcccatggcctcagctcaaagcgttggaattgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgt |
299 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250340 |
tggaaaatttatgtcccatggcctcagctcaaagtgttgcaattgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgt |
250241 |
T |
|
| Q |
300 |
gctcattgtagactaaaacttctaggcgt-ttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctttcag |
398 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250240 |
gctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgttctataaacaattatctttttctttcag |
250141 |
T |
|
| Q |
399 |
ttatatgggacaacattatttttctgagttggaagttgttgcttgtatgccacgtttctaaactgtggatgt |
470 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
250140 |
ttatatgggaccac---atttttttgagttggaagttgttgcttgtatgccacgtttctaaactatggatgt |
250072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 533 - 703
Target Start/End: Complemental strand, 249946 - 249776
Alignment:
| Q |
533 |
ttcttgtaggatatacagtatggtgtatatatctagcggattgtgttaatggattaacttgaaaaattgtctcatgtggagttattctaaattctaaaaa |
632 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
249946 |
ttcttgtaggatatatagtatggtgtatatatctagcggattgtgttagttgattaacttgaaaaattgtctcatgtggagttattctaaattctaaaaa |
249847 |
T |
|
| Q |
633 |
gagcatgtagggttagaagttttgtaaatgaccaagtgaagtctattctaaaaatagtttaaatgaatgat |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
249846 |
gagcatgtagggttagaagttttgtaaatgactaagtgaagtctattctaaaaatagtttaaatgaatgat |
249776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 570 - 629
Target Start/End: Original strand, 42199941 - 42200000
Alignment:
| Q |
570 |
ggattgtgttaatggattaacttgaaaaattgtctcatgtggagttattctaaattctaa |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
42199941 |
ggattgtgttaatggattaacttgaaaaattgtctcctgtggagttgttctaaattctaa |
42200000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 504
Target Start/End: Original strand, 42199791 - 42199894
Alignment:
| Q |
416 |
atttttctgagttggaagttgttgcttgtatgccac----------gtttctaaactgtggatgtcagcaatttg-----gtttgatcaggattatgcaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
42199791 |
atttttctgagttggaagttgttgcttgtatgccacatttaatgtggtttctaaaccgtggatgtcagcaatttggtttggtttgatcaggattttgcaa |
42199890 |
T |
|
| Q |
501 |
tctg |
504 |
Q |
| |
|
|||| |
|
|
| T |
42199891 |
tctg |
42199894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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