View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_40 (Length: 342)
Name: NF18153_low_40
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 84 - 334
Target Start/End: Original strand, 51575536 - 51575788
Alignment:
| Q |
84 |
attattgaaattgaactttgaatatcatgcttagaataataaaggagataacttcactactttcacgcctctagaacgataaatatgtattttgaatttt |
183 |
Q |
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| T |
51575536 |
attattgaaattgaactttgaatatcatgcttagaataataaaggagataacttcactactttcacgcctctagaacgataaatatgtattttgaatttt |
51575635 |
T |
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| Q |
184 |
caaaatgatagtaaaagttcagaaatgtctttaacttgaacatgtcacat--tatattagagttgcatttaagtgtgagaaaataagaagaatcttacta |
281 |
Q |
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| T |
51575636 |
caaaatgatagtaaaagttcagaaatgtctttaaattgaacatgtcacattatatattagagttgcatttaagtgtgagaaaataagaagaatcttacta |
51575735 |
T |
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| Q |
282 |
gcatggatatgtgatccattagaattttgtagtgatagaacaacatgatgatg |
334 |
Q |
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| T |
51575736 |
gcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgatg |
51575788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 1865021 - 1864915
Alignment:
| Q |
224 |
catgtcacattatattagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatagaaca |
323 |
Q |
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| T |
1865021 |
catgtcatattatactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaaca |
1864922 |
T |
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| Q |
324 |
acatgat |
330 |
Q |
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|| |||| |
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| T |
1864921 |
acgtgat |
1864915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 1865146 - 1865112
Alignment:
| Q |
92 |
aattgaactttgaatatcatgcttagaataataaa |
126 |
Q |
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| T |
1865146 |
aattgaactttgaatatcatacttagaataataaa |
1865112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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