View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_low_43 (Length: 324)

Name: NF18153_low_43
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_low_43
NF18153_low_43
[»] chr1 (1 HSPs)
chr1 (15-307)||(35127721-35128013)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 35128013 - 35127721
Alignment:
Q  15 catcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccattgtactggatgacatcgttggcatcacttga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128013 catcatcaagcttatgtggtgaaggttcctcctcagagaaataatcagtgctgtctttctcagaaccattgtactggatgacatcgttggcatcacttga 35127914  T
Q  115 atgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatgacactttcctcgctaacatcaaccatttcattgtct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  35127913 atgtgataattccggctcgaactcctcgttcacagccctttgcccataatcattatccaatatcacactttcctcactaacatcaaccatttcattgtct 35127814  T
Q  215 ctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccctgtccttgataa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127813 ctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccctgtccttgataa 35127721  T

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